Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00518 ATGTCCACACAACCTTTGCCGAGATCGGTTGCCGTCGCCGTGATCGGCGGCTCCGGCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGGTGGATAATCTCGTTCCTCAAGCCGATAGGTTCATCTTAGTTCACGTTATCTCTCGAATCACTTCAATTGCCACGCCAACTGAAGAGTATATTCCTGTTCCGGAATCAGACGCCGACGTGTTTGCAGCTTATGTGGACGATGTGAAGCAAAAATCTGAACAAATCTTCGTTCCGTTCAAGACACTCTGCGGTTCAAACGTGATGGAAACAGTACTGCTAGAAGATGACAATGTTGCAGAAGCACTGCTTAGCTTTATTTCGGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACCCCTCAAATTATATAACAAGGAAGCTAAAAGGACCTGGAATACCAACTACCATTTTAAGATGTGCTCCAGACAGTTGTGATGTGTATGTTGTGGCTAGAGATAGAATTGTTTCGAAGTTGGCGGATTTGTCATCTTCACATTCTCATGAGACTAGCCCAAGTTACTTCATGTCTACTAAAGTAAATAAAGTAGACAATGAGGCTGGCCTTGGCAGAGAAGTGTCGGGAATCAGTTCATCCTCAACAGAATCTAAAATCCTAAAGAATTTCAGATTTTTATCGATTTCCGAGCATAGTTACATTGGTCTGCAAACATTTAGTCGCAGGGTTTCTTTTGAAAATTGTACCAAAAATGATAATCCAGAAAACTGTGAAGATGATATTGAAATTATAAGCCTCCACTCCTTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACGGCTGCAACTGGAGTTGCACAATACTATCGCGATGTACAAACAGGTTTGTGAAGAGCTGGTTGAAGCTCAGAATCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTGAGAAAAATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCGAAAAATAAGTTTTCCAATGAGTCATACGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAGCAGAGAATTGTTGATAGGTTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGACGACATCAAGATAGCGACAAACTTCTTTTCTGAGGACTTGATGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTTTAAAAGAGGTTGAGATTCTTAGTCAACTGCATCATCCTAATATGGTTTTGTTACTTGGAGCCTGTCCTGAGAGTGGTTGCCTTGTTTATGAATACCTGGAAAATGGAAGTCTTGAAGACTATCTTCTCAACAAAAATAGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGCATAGTTTTTGAAATGGCTTGTGGGCTTTCATTCTTGCATAATTCGAAGCCAGAGCCAATTGTCCATCGAGATATAAAACCTGGCAACATTTTACTAGACAGAAACTATGTGAGCAAAATTTCTGATGTTGGGCTGGCTAAACTCCTTGCAGAAGTCGTGCCTGACAATATTACAGAGTACCGAGAATCAATACTTGCAGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTCAGACCGAAATCAGATGTATATGCATTTGGAGTTATAACTCTCCAATTAATAACTGGTCGTCATGCACGTGGACTCATCGTGACTGTAGAAGATGCGATTAGAAATGGTTCCTTTCGTGATTTTTTAGATACATCAGCTGGAGATTGGCCGTTGGATGAGACAGTGGAATTGGCTCAAATTGCCCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCGAGAGATTTTCTAATGCGGCAAATGCTAGTGCAAGGATGGGAAAAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCTTGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTCCTGCATTCTGCCTTGACTCCGAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTCACCTTTTGA 2289 0.4185 MSTQPLPRSVAVAVIGGSGKGSRRAVQWAVDNLVPQADRFILVHVISRITSIATPTEEYIPVPESDADVFAAYVDDVKQKSEQIFVPFKTLCGSNVMETVLLEDDNVAEALLSFISESGVQTLVLGSDPSNYITRKLKGPGIPTTILRCAPDSCDVYVVARDRIVSKLADLSSSHSHETSPSYFMSTKVNKVDNEAGLGREVSGISSSSTESKILKNFRFLSISEHSYIGLQTFSRRVSFENCTKNDNPENCEDDIEIISLHSFDSIASAQREQLVMQEEVERLQLELHNTIAMYKQVCEELVEAQNQALLLSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSNESYERQMAELDVLKESIEKQRIVDRLLSNDRRYRKYTMDDIKIATNFFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYLENGSLEDYLLNKNRKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVEDAIRNGSFRDFLDTSAGDWPLDETVELAQIALKCTALRCRDRPELDTEVLPLLERFSNAANASARMGKNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSKHNVSPMTKLKLLHSALTPNHTLRSAIQEWKSGVTF* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00518 762 Pfam Protein tyrosine and serine/threonine kinase 413 664 IPR001245 GO:0004672|GO:0006468
Lapu3g00518 762 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Lapu3g00518 762 Pfam U-box domain 692 757 IPR003613 GO:0004842|GO:0016567
Lapu3g00518 762 CDD RING-Ubox_WDSUB1-like 692 746 - -
Lapu3g00518 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Lapu3g00518 762 SMART Ubox_2 694 756 IPR003613 GO:0004842|GO:0016567
Lapu3g00518 762 Gene3D Transferase(Phosphotransferase) domain 1 481 691 - -
Lapu3g00518 762 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 380 480 - -
Lapu3g00518 762 Gene3D Phosphorylase Kinase; domain 1 387 480 - -
Lapu3g00518 762 SUPERFAMILY RING/U-box 688 757 - -
Lapu3g00518 762 SMART serkin_6 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00518 762 Coils Coil 334 380 - -
Lapu3g00518 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 760 IPR013083 -
Lapu3g00518 762 PANTHER OS02G0152300 PROTEIN 10 755 - -
Lapu3g00518 762 CDD STK_N 9 161 - -
Lapu3g00518 762 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Lapu3g00518 762 ProSiteProfiles Protein kinase domain profile. 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00518 762 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 161 - -
Lapu3g00518 762 ProSiteProfiles U-box domain profile. 690 762 IPR003613 GO:0004842|GO:0016567
Lapu3g00518 762 Coils Coil 267 287 - -
Lapu3g00518 762 Gene3D HUPs 8 159 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00518 Lapu-Chr3 5280432 5285876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00518 9 758 Plant U-box Gene Family AT5G57035 53.048 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu3g00518 PK_Tyr_Ser-Thr 9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00518 - - vun:114178082 1362.05