Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00515 ATGGAGGAAATATCTTCGAGTATTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAGGAGTCTGCAGTGACAACTCACATGGAGATAACTGGGCTGAAGCTTATGGCAAATACAGCAGCGGCTGCTTTGATGTTAAATCCTGCGGTGGAGTGTTGTCAGCCATATTCTGTTGGAAGTGAAAGCCATGCAGATGTTAGTCTGCAGCACCAGATTACGGTATCTGCAGAGGTAAAGGAGAATCAAGTTGGAGATGCCCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTTTTGAATGAAACCCATCATAAGGCTAGAAAGGAAGATGAACTAATGTTAGCTGTGGATTTTCAATGTCTACATAGTTCAAGCTCTCAGTCTGTGGCTAATGGCCAAAGTGATCCTTGTAGGGAGGAAGCTGTGCCGTTGAAGACTATTTATTCTGAAATAGAATCACCAATCATCATGAATGTTAATGATGATGTTCATGTCAAGTCTGGAGTAAACGAGCCGTGTCCATCAATGAAGCCAGTGGAGAACACAGTTTCTGTTGCAATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGTCTCTGATCCAAAATCATCTGCTGTGCTTCTTGGCCAGTTGCCTGGGGAGAATAAAACATGGAGAACAAGCAACAAGAATGCTTTGGAATTGAATAGCGGCCCTCTATGGGGTTATTCATCAATTTGTGGAATGAGACAGGAGATGGAAGATGTTATTTCTGTTAAGCCTCAACTTTTTCACGTTCCTTCACAGATGCTGATGAATGATCACGTAAATGAGAACGAAAAACAGTCACTAGTCCACTTTTTCGCCGTCTATGATGGACATGGGGGCCTTCAGGTTGCTAACTACTGCCAGGAACGTCTTCATTCAGTATTGGTTGAGGAGGTAGAGGCTGCACAATCAAGTTTGGCTGAAACAAATGGGAGAGATGATTGGCAGGACCACTGGAAGAAAGCATTCATCAACTGTTTTCAGAGAGTGGATGATGAGGTTGGAGGAACTGGTGCAAGTAATAATGAAAACAACAGTGGTGGATCCGAGCCTAATACTGTACCTGTTGCTGCTGAGACTGCTGGTTCCACTGCGGTGGTCGCTATTTTAAGTCAAACCCTCATAATAGTTGCAAATTGTGGAGATTCAAGAACTGTCTTATACCGTGGAAAAGAAGCCATGCCTCTGTCTTCTGACCACAAACCAAATAGAGAGGACGAACGGGAAAGGATAGAAGCGGCAGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTGAAACCATGGATAATTCCAGAGCCAGAAGTCAATATTGTGCGTAGAGAGAAAAATGATGAGTGTCTTATTCTAGCAAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCCTGCGAGGTTGCTAGAAAGAGAATCCTTCTTTGGCACAAAAAGTTTGGTGAAAACGGAGCAACAGGACATGGTGAAGGAGCTGATCCTGCAGCTCAGTCTGCTGCAGAGTATCTGACAAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTCATAGACTTAAAGGCTCAAAGAAAAATTAAGAGGAAGCCTTAA 1686 0.4294 MEEISSSIAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECCQPYSVGSESHADVSLQHQITVSAEVKENQVGDALVSEMVIECESNWVLNETHHKARKEDELMLAVDFQCLHSSSSQSVANGQSDPCREEAVPLKTIYSEIESPIIMNVNDDVHVKSGVNEPCPSMKPVENTVSVAMDITSEDQSGSDVSDPKSSAVLLGQLPGENKTWRTSNKNALELNSGPLWGYSSICGMRQEMEDVISVKPQLFHVPSQMLMNDHVNENEKQSLVHFFAVYDGHGGLQVANYCQERLHSVLVEEVEAAQSSLAETNGRDDWQDHWKKAFINCFQRVDDEVGGTGASNNENNSGGSEPNTVPVAAETAGSTAVVAILSQTLIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERERIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVARKRILLWHKKFGENGATGHGEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRKIKRKP* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00515 561 Gene3D - 225 561 IPR036457 -
Lapu3g00515 561 MobiDBLite consensus disorder prediction 349 368 - -
Lapu3g00515 561 SUPERFAMILY PP2C-like 234 552 IPR036457 -
Lapu3g00515 561 PANTHER PROTEIN PHOSPHATASE 202 551 IPR015655 GO:0004722|GO:0006470
Lapu3g00515 561 SMART PP2C_SIG_2 269 551 IPR001932 -
Lapu3g00515 561 CDD PP2Cc 240 551 IPR001932 -
Lapu3g00515 561 MobiDBLite consensus disorder prediction 348 368 - -
Lapu3g00515 561 ProSitePatterns PPM-type phosphatase domain signature. 285 293 IPR000222 GO:0043169
Lapu3g00515 561 FunFam Protein phosphatase 2C 16 226 561 - -
Lapu3g00515 561 ProSiteProfiles PPM-type phosphatase domain profile. 238 551 IPR001932 -
Lapu3g00515 561 SMART PP2C_4 228 549 IPR001932 -
Lapu3g00515 561 Pfam Protein phosphatase 2C 265 544 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00515 Lapu-Chr3 5240769 5244199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00515 171 561 PP2C-type Phosphatase Gene Family AT4G26080 52.010 2.01e-132 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00515 K14497 - gmx:100789207 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00515 3 5240769 5244199 Lapu3g00515 3 5240769 5244199 ECH
Lapu3g00515 3 5240769 5244199 Lapu9g00414 9 4372025 4376115 PCT