Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00514 ATGAAGAAAGGAAGCTTCGGGCATGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGACAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTCCACCTCCAATCAGGCCTACGGACGACCAGTTATCTTTGGCAGATGTAGATGTTATTAAAGTTGTTGGAAAGGGAAATGGAGGGGTTGTCCAATTGGTACAACACAAATGGACTAGTCAGTTTTTTGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCTATGCGAAGGCAGATTGCACAAGAGCTGAAAATTAATCAACAGGCTCAGTGTCCTTATGTTGTTGTCTGCTATCAATCATTTTATGAAAACGGTGTCATATCAATCATCTTAGAGTACATGGACGGGGGGTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCGGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTGCTCAAGGGTTTAGTTTACCTTCACCATGAAAAGCATATTATCCACAGAGACTTAAAACCTTCTAATTTGTTAATAAATCATATAGGAGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCATTGGAACTTACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTGCTTGAGTGTGCTTTGGGGCGATTTCCATATACACCAGAAGATCAAAGTGAAAGTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCATCTGGACAATTTTCTACAGAATTTTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGGATCGACTGACAGCTCAGGAATTAATGGGACATCCTTTTGTCAGCTTGTATGATGACTTGGAGGTGAATCTTTCATCTTACTTCTCCAATGCAGGATCTCCTCTTGCTAACCTTATGAAGAGCGCTGCTTACAAATATGAGGAGCATTTGTAG 1107 0.4047 MKKGSFGHGLKLSVPVSDQSNFDKFLTESGTFKDGDLLVNRDGVRIVSQSDVEAPPPIRPTDDQLSLADVDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRRQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLRKVKTIPEPFLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPEDQSESWESIFELIETIVDKPPPIPPSGQFSTEFCSFISACLQKDPKDRLTAQELMGHPFVSLYDDLEVNLSSYFSNAGSPLANLMKSAAYKYEEHL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00514 368 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00514 368 Gene3D Phosphorylase Kinase; domain 1 49 149 - -
Lapu3g00514 368 SUPERFAMILY Protein kinase-like (PK-like) 68 339 IPR011009 -
Lapu3g00514 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lapu3g00514 368 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 334 - -
Lapu3g00514 368 Gene3D Transferase(Phosphotransferase) domain 1 150 361 - -
Lapu3g00514 368 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lapu3g00514 368 CDD PKc_MAPKK_plant_like 85 336 - -
Lapu3g00514 368 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00514 368 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00514 368 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Lapu3g00514 368 FunFam Mitogen-activated protein kinase kinase 6 151 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00514 Lapu-Chr3 5235234 5240448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00514 1 327 MAP Kinase Kinase Gene Family AT4G29810 66.667 4.94e-171 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lapu3g00514 Pkinase 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00514 K20603 - gmx:100789734 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00514 3 5235234 5240448 Lapu3g00514 3 5235234 5240448 ECH
Lapu3g00514 3 5235234 5240448 Lapu9g00413 9 4366865 4371906 PCT