Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00512 ATGGTTTGGTTTCAATGTGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGACGAGTCACTTTCGAACTTGCTCCGCTTACAAATTGTCGTGCATTGACTGCGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAGTGCTGCAACTGCCACGCCTAACAAGGATAACAAGCAAAGGCCGGAAGTTGATATTAATGTGGGGTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACAAAAACTACAAGTAAGCAAACACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCCAAGGCGAGAGCATTCCATGCTTCACAGCAACAACCAATCCAGGCAGATAAATCTGCTACTGGTGATGCTAAGACTGTTGTGAAGACTGCTCCTAATGATGAGGTGAGAGATGACAAAAATGTAGAGCTGCAAAAATTGCAAGAGTCTTCTACACAAAATGACTCAAAACCAGGGAATGAAATTTCTTCAGCAAAGAAAAAGAGGAAACTTGAAGCACTGGAAGATGACCTTGTTAAAAAAAGCAGGAATGACACTTCAGTTGACATGGGAAATGGAGAAGTAATTCAGGGAGAAAAAGCAACAGGAGAGAGCAATTTGAAGGAAGGAGCTCACTGTACAAGTGCTGTCAAGAATAAAATAAAATGGAAGAAATTTATCAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTTAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTGGCATTGTAGTGGACGAAGCTGAATTGAGTGAGGCGCTTGAGCAGAAGATAAATTCCAGCTCGAGATTTGCAGTCGAGAACAAGTATGTGCGATTGATGGCCAAAGATTGA 936 0.4209 MVWFQCEDCGDNLKKPKLTSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLSAATATPNKDNKQRPEVDINVGLSERPPWFCSLCNTKTTSKQTLLLHADGKKHRAKARAFHASQQQPIQADKSATGDAKTVVKTAPNDEVRDDKNVELQKLQESSTQNDSKPGNEISSAKKKRKLEALEDDLVKKSRNDTSVDMGNGEVIQGEKATGESNLKEGAHCTSAVKNKIKWKKFIKSALKSHPDGILKMKKLRKVVLKALQESGIVVDEAELSEALEQKINSSSRFAVENKYVRLMAKD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00512 311 FunFam UBP1-associated proteins 1C 89 132 - -
Lapu3g00512 311 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Lapu3g00512 311 MobiDBLite consensus disorder prediction 166 180 - -
Lapu3g00512 311 MobiDBLite consensus disorder prediction 121 144 - -
Lapu3g00512 311 MobiDBLite consensus disorder prediction 166 197 - -
Lapu3g00512 311 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Lapu3g00512 311 Gene3D - 1 50 - -
Lapu3g00512 311 MobiDBLite consensus disorder prediction 181 197 - -
Lapu3g00512 311 Gene3D Classic Zinc Finger 89 131 - -
Lapu3g00512 311 MobiDBLite consensus disorder prediction 58 81 - -
Lapu3g00512 311 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Lapu3g00512 311 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Lapu3g00512 311 Coils Coil 184 204 - -
Lapu3g00512 311 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 307 IPR039999 GO:0003677
Lapu3g00512 311 SUPERFAMILY beta-beta-alpha zinc fingers 85 127 IPR036236 -
Lapu3g00512 311 Pfam Zinc-finger of C2H2 type 95 119 - -
Lapu3g00512 311 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Lapu3g00512 311 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00512 54 223 C2H2 Transcription Factor Family AT2G19380 36.842 3.15e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00512 K15263 - gmx:100790272 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00512 3 5216766 5220631 Lapu3g00512 3 5216766 5220631 ECH