Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu3g00505 | ATGAAGCCATTCTTCTTGTCGAATCATCCTGATACTATGTACAATTGTCCACAAGTTGATTTCAGTCATTCAATGGCCCATACTCCTTATCCTTGTGGTGATCCTTATTTTGCCAGTTCATTAGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATTATACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCCGTTGAGCTTGCAGAAGATGGTCCCATTTATGTCAATGCTAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGTCACGCATTGAAGAGGGTTAGGGGGTCTGGTGGACGCTTTCTCAGCGCCAAACAGCTGCAAGAGTCTAATGCAGAAGATGTTAGTAATACCCATTCAGGCCCTGGCCCTGTCAACGTGTATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACAGGAGAAAATGCATCTATCTCATTTTCAGCCATCTCTGGCTTAACAAGCATGTCCAGTAACAGTCTGAATTTCAGGCAGCCCGAACACAACTTCTTGGGGAACGCCTCAAACATGGGTGGATCATCACAATGCAGCGGGGGACTTACGTTCAGTGGTGGAGCTCGGCAATGTGCTTCTGTGGGCCGGTGA | 708 | 0.4619 | MKPFFLSNHPDTMYNCPQVDFSHSMAHTPYPCGDPYFASSLVAYGPQAINQPQIIPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQESNAEDVSNTHSGPGPVNVYQKKDASEVESHPSRTGENASISFSAISGLTSMSSNSLNFRQPEHNFLGNASNMGGSSQCSGGLTFSGGARQCASVGR* | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu3g00505 | 235 | ProSiteProfiles | NF-YA/HAP2 family profile. | 74 | 134 | IPR001289 | GO:0003700|GO:0006355 | |
Lapu3g00505 | 235 | MobiDBLite | consensus disorder prediction | 137 | 154 | - | - | |
Lapu3g00505 | 235 | SMART | cbf3 | 73 | 134 | IPR001289 | GO:0003700|GO:0006355 | |
Lapu3g00505 | 235 | PRINTS | CCAAT-binding transcription factor subunit B signature | 77 | 99 | IPR001289 | GO:0003700|GO:0006355 | |
Lapu3g00505 | 235 | PRINTS | CCAAT-binding transcription factor subunit B signature | 108 | 131 | IPR001289 | GO:0003700|GO:0006355 | |
Lapu3g00505 | 235 | MobiDBLite | consensus disorder prediction | 137 | 177 | - | - | |
Lapu3g00505 | 235 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 11 | 186 | IPR001289 | GO:0003700|GO:0006355 | |
Lapu3g00505 | 235 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 77 | 131 | IPR001289 | GO:0003700|GO:0006355 | |
Lapu3g00505 | 235 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 79 | 99 | IPR018362 | GO:0003677|GO:0016602 | |
Lapu3g00505 | 235 | Gene3D | - | 74 | 136 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu3g00505 | Lapu-Chr3 | 5157939 | 5162449 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu3g00505 | 45 | 140 | CCAAT-HAP2 Transcription Factor Family | AT1G54160 | 66.327 | 6.97e-40 | 137 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Lapu3g00505 | CBFB_NFYA | 4.9e-27 | No_clan |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu3g00505 | 3 | 5157939 | 5162449 | Lapu3g00505 | 3 | 5157939 | 5162449 | ECH |