Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00505 ATGAAGCCATTCTTCTTGTCGAATCATCCTGATACTATGTACAATTGTCCACAAGTTGATTTCAGTCATTCAATGGCCCATACTCCTTATCCTTGTGGTGATCCTTATTTTGCCAGTTCATTAGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATTATACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCCGTTGAGCTTGCAGAAGATGGTCCCATTTATGTCAATGCTAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGTCACGCATTGAAGAGGGTTAGGGGGTCTGGTGGACGCTTTCTCAGCGCCAAACAGCTGCAAGAGTCTAATGCAGAAGATGTTAGTAATACCCATTCAGGCCCTGGCCCTGTCAACGTGTATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACAGGAGAAAATGCATCTATCTCATTTTCAGCCATCTCTGGCTTAACAAGCATGTCCAGTAACAGTCTGAATTTCAGGCAGCCCGAACACAACTTCTTGGGGAACGCCTCAAACATGGGTGGATCATCACAATGCAGCGGGGGACTTACGTTCAGTGGTGGAGCTCGGCAATGTGCTTCTGTGGGCCGGTGA 708 0.4619 MKPFFLSNHPDTMYNCPQVDFSHSMAHTPYPCGDPYFASSLVAYGPQAINQPQIIPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQESNAEDVSNTHSGPGPVNVYQKKDASEVESHPSRTGENASISFSAISGLTSMSSNSLNFRQPEHNFLGNASNMGGSSQCSGGLTFSGGARQCASVGR* 236
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00505 235 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Lapu3g00505 235 MobiDBLite consensus disorder prediction 137 154 - -
Lapu3g00505 235 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Lapu3g00505 235 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Lapu3g00505 235 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Lapu3g00505 235 MobiDBLite consensus disorder prediction 137 177 - -
Lapu3g00505 235 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 11 186 IPR001289 GO:0003700|GO:0006355
Lapu3g00505 235 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Lapu3g00505 235 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Lapu3g00505 235 Gene3D - 74 136 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu3g00505 Lapu-Chr3 5157939 5162449 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00505 45 140 CCAAT-HAP2 Transcription Factor Family AT1G54160 66.327 6.97e-40 137
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu3g00505 CBFB_NFYA 4.9e-27 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00505 3 5157939 5162449 Lapu3g00505 3 5157939 5162449 ECH