Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00500 ATGGGTGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCATCACCCTCTTCCTCGGACAAGTCCAGCACAACCATGTTATACTATGGCCTTGTAGTGGTGGGGGTTGCAGCCATGGCATTAGTCCTATACAACTTCATCATCATCAGGAGAAGCAGGAGGCTCCACATGCAAGCACAAGGGGCAGATGGGTTGGTGGAGGTGGTGATGGAAAGTAGAACAGAGAACTGTCAAAGGAACTTCAACTTGGTCTCAAGCTTCAAGTACAAGAAAGAAGGAGCTGTGGGTTATGATGATGGTGATGATGAATGCTCAGTTTGCTTATCGGGTTTTGAAGAAGGGGAAGAAGTTGGGCAGCTGCCACAGTGCAAGCACTGGTTCCACGCTCCATGCATAGACATGTGGCTCTACTCTCACTTGGACTGCCCAATTTGTCGAACACCTGTCGCTCGTTTCTCGCAGCATAATTCTGGTTCGGCATTGCTGGAATCCAGTAGTGGTGTCTCGGCATGA 513 0.499 MGDFQGPFIVSPPPSPSSSDKSSTTMLYYGLVVVGVAAMALVLYNFIIIRRSRRLHMQAQGADGLVEVVMESRTENCQRNFNLVSSFKYKKEGAVGYDDGDDECSVCLSGFEEGEEVGQLPQCKHWFHAPCIDMWLYSHLDCPICRTPVARFSQHNSGSALLESSSGVSA* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00500 170 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g00500 170 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lapu3g00500 170 SUPERFAMILY RING/U-box 99 152 - -
Lapu3g00500 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 155 IPR013083 -
Lapu3g00500 170 CDD RING-H2_EL5-like 103 146 - -
Lapu3g00500 170 FunFam RING-H2 finger protein ATL52 66 151 - -
Lapu3g00500 170 SMART ring_2 104 145 IPR001841 -
Lapu3g00500 170 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 150 IPR044675 -
Lapu3g00500 170 Pfam Ring finger domain 102 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00500 Lapu-Chr3 5117769 5118281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00500 31 150 C3H Transcription Factor Family AT5G17600 36.434 8.65e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00500 - - vun:114177506 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00500 3 5117769 5118281 Lapu3g00500 3 5117769 5118281 ECH
Lapu3g00500 3 5117769 5118281 Lapu9g00404 9 4280159 4281124 PCT