Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00495 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTGAGAGAATACATTAGGGTTCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTCAGATGGCTGAATTATCTCAGACCTGATATTAAGAGAGGCAATATATCCTCAGATGAAGAAGAGCTCATTATCAGACTCCACAAACTCCTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTGAAAGATGGCCACAAAACCTCAACCTCTTGTCGTAGACCAAGCAATGAAAACAGCACACAGAATCCAATGCCCCACTTGGCCAATCCCTCTTCTTCCCTCTCTCTTCCTAAACTAGATTCCCACCTCGTCCATACAAAAGCCACCAAGTGCACTAAGCAGTTTTTCCCTCACCCATCAATGCTGCAACTGCCCCACAAGTCCCAGGAAGAAGCTCAAGAAGATAGGGTTGTTGTGGATGCTGTAATTAGTGACCAAATGGAACTCACTACCAACCACAACGCCTTCCTGTCCTTTCCCCATCAAGAAAAAGAGCTCTCAACAGATATGCTCGTAGATTTCAACGTGGAGGATATCTGCTTCTCTGATCTTCTCGACTCCGATTTCTCCTCTAATATCTACAACTTCAGCTGCACTACCAACACTGTTCACAAAAACAACAACAACGACGACGACCACCACCACTTTTTCTCTCCTTCTTCTGACCAACCTTGCTCTGATGAACTTCTCAAGAGCTGGACGCAAACCAACTTTGCAGATGAAACCAATGCTTCCAACAATCTTCATTCTTTCATTTCGTTCCTCGAGACCACCGAGGAAAGACTAGGACAATCATAA 963 0.4413 MGRSPCCSKEGLNRGAWTAHEDKILREYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSTSCRRPSNENSTQNPMPHLANPSSSLSLPKLDSHLVHTKATKCTKQFFPHPSMLQLPHKSQEEAQEDRVVVDAVISDQMELTTNHNAFLSFPHQEKELSTDMLVDFNVEDICFSDLLDSDFSSNIYNFSCTTNTVHKNNNNDDDHHHFFSPSSDQPCSDELLKSWTQTNFADETNASNNLHSFISFLETTEERLGQS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00495 320 MobiDBLite consensus disorder prediction 126 145 - -
Lapu3g00495 320 MobiDBLite consensus disorder prediction 114 145 - -
Lapu3g00495 320 FunFam MYB-related transcription factor 13 66 - -
Lapu3g00495 320 CDD SANT 16 61 IPR001005 -
Lapu3g00495 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu3g00495 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Lapu3g00495 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu3g00495 320 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lapu3g00495 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu3g00495 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu3g00495 320 Gene3D - 14 66 - -
Lapu3g00495 320 SMART sant 66 114 IPR001005 -
Lapu3g00495 320 SMART sant 13 63 IPR001005 -
Lapu3g00495 320 FunFam Transcription factor TT2 70 139 - -
Lapu3g00495 320 CDD SANT 71 112 IPR001005 -
Lapu3g00495 320 Gene3D - 70 140 - -
Lapu3g00495 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu3g00495 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00495 Lapu-Chr3 5080230 5081812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00495 1 148 MYB Transcription Factor Family AT4G38620 61.486 5.51e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g00495 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00495 K09422 - gmx:100802704 452.981