Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00492 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATATATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTGCCACACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGTTTGGGGAGGAAAATAGACCCTGAGCCAGGGAGATGTAGGAGAACAGATGGGAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAACAACAATCACAGATGCCTCAACCCCCACTATCTTATCAATCACCAAAAACAGTCCTGCACTCTCCCCAACCACTCATTCTCTCTCCGTGTCCTCTCATGACACTTACCATCACCACCACCCTCAACATTCCTCCCACTCCTTCCTCTATCATCACACCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCTTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCATTGACCATAAGCTCTTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGTCTCAGTGGCAACAACTCAAAACAGCCACAGCAAGATCAGGGTTGCTATATATCAGGAACTGGCAGTGATATCAAGTGTGAAACTTTCATGAAACTTGGAAAAGAAGAACCTCAGAAGACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACTTCTTCTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1128 0.469 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTATTITDASTPTILSITKNSPALSPTTHSLSVSSHDTYHHHHPQHSSHSFLYHHTSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGTGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRDG* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00492 375 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu3g00492 375 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Lapu3g00492 375 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu3g00492 375 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lapu3g00492 375 MobiDBLite consensus disorder prediction 145 181 - -
Lapu3g00492 375 PANTHER GROWTH-REGULATING FACTOR 5 8 363 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lapu3g00492 375 MobiDBLite consensus disorder prediction 145 160 - -
Lapu3g00492 375 Pfam WRC 78 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00492 Lapu-Chr3 5050216 5052142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00492 7 120 GRF Transcription Factor Family AT3G13960 71.930 8.44e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lapu3g00492 WRC 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00492 - - gmx:100783524 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00492 3 5050216 5052142 Lapu3g00492 3 5050216 5052142 ECH
Lapu3g00492 3 5050216 5052142 Lapu9g00394 9 4192909 4195724 PCT