Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00478 ATGACAATCGCATGGGGATCGATCTTCTCTAGTTGTTTCAAGAGTGAGTCTGTCTCTCCTTCTCCCAAGCCCACCAAAGTGGTGGCTACAAAGGGTGGCTCTTCTTCCAACAGGGTCTCCATTATGGACTTGAGTTTTCCTGGCTCAACGCTTTCAGAGGATCTCTCCGTTTCTCTTGTGGGGTCTAACCTGCACGTTTTTTCACTCGCCGAGCTCAAGATCATCACACAGAGTTTCTCTTCGAGTAACTTTTTAGGAGAAGGAGGTTTTGGACCCGTGCATAAGGGCTTCATTGATGACAAGCTTAGGCCTGGCCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCACAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCAACATCTGGTGAAGTTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAATATTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCGGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATATTGTTAGACTCTGATTATAATGCAAAGCTTTCTGATTTTGGCTTGGCAAAAGATGGTCCAGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGGTATGCAGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTATACAGTTTTGGAGTTGTTCTCTTGGAGATTCTAACAGGAAGAAGATCAGTGGACAAAGGGCGCCCGCCAAGAGAGCAAAATCTCGTGGAATGGGCCAGACCTGTTTTGAATGATTCCCGGAAACTTAGCCGAATAATGGATCCAAGACTTGAGGGACAGTATTCTGAGGTAGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCACAGGCCAAGAAGTAGACCCTTGATGAGCACTGTGGTTAGTGTTCTTGAGCCTCTCAAGGACTTTGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCAACTGATCACAATGAGGTGGCAAAAGAGGCTGAAACACCCAAGGAGAGGAAGAGGGAAAATGGTCACCATCATCACAGGAATCATCATCACAATAATGGTCATAAACATCATGATCACGATGAGGCCAATAAAGATGCAAATGGTCAGCATCACCACCGAAGTCATCGCCACAATGGCCATAGGCATCATCCACTTAAATCGCCCAAGACACCAATTTCATCATCCGAGTCACAGAATAATGAACACCGAAATGGTAGAAGAAGTGGGTCAAACTCACCTGACACCTCCACTGCATCAGAAGCACAAGGAAGCATGGGTTAG 1446 0.4578 MTIAWGSIFSSCFKSESVSPSPKPTKVVATKGGSSSNRVSIMDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEILTGRRSVDKGRPPREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVSVLEPLKDFDDVPIGPFVYTVPTDHNEVAKEAETPKERKRENGHHHHRNHHHNNGHKHHDHDEANKDANGQHHHRSHRHNGHRHHPLKSPKTPISSSESQNNEHRNGRRSGSNSPDTSTASEAQGSMG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00478 481 MobiDBLite consensus disorder prediction 379 393 - -
Lapu3g00478 481 ProSiteProfiles Protein kinase domain profile. 79 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00478 481 CDD STKc_IRAK 85 359 - -
Lapu3g00478 481 Gene3D Phosphorylase Kinase; domain 1 48 161 - -
Lapu3g00478 481 PANTHER OS01G0588500 PROTEIN-RELATED 41 360 - -
Lapu3g00478 481 FunFam Probable serine/threonine-protein kinase PBL8 162 371 - -
Lapu3g00478 481 MobiDBLite consensus disorder prediction 443 481 - -
Lapu3g00478 481 SUPERFAMILY Protein kinase-like (PK-like) 54 357 IPR011009 -
Lapu3g00478 481 MobiDBLite consensus disorder prediction 409 423 - -
Lapu3g00478 481 FunFam Serine/threonine-protein kinase BIK1 48 161 - -
Lapu3g00478 481 MobiDBLite consensus disorder prediction 371 481 - -
Lapu3g00478 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lapu3g00478 481 Pfam Protein tyrosine and serine/threonine kinase 83 355 IPR001245 GO:0004672|GO:0006468
Lapu3g00478 481 MobiDBLite consensus disorder prediction 424 442 - -
Lapu3g00478 481 Gene3D Transferase(Phosphotransferase) domain 1 162 365 - -
Lapu3g00478 481 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00478 Lapu-Chr3 4925650 4928249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00478 65 356 Glycoside Hydrolase AT3G07070 54.237 2.65e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g00478 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00478 - - gmx:100799411 828.165