Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00466 ATGTCCACCTCCTCGGATTATTCAGGATTTTACGCCAACCGGACGGCGAAGTCGCCGGCGGAGAAGTCTACGTTCTCTCAGACTTGCAGTCTATTGAGACAATATCTCAAGGAAAAGGGTACCTTCGGAGACCTTACTATCGGGATGACATGCACCGTCGAAGCAAACGGTTCTCCTTCTGAAATATCGTGTCACTCTGCAACAACCATGGAGTTGTTTCCCACCTCCTTCACACAACGGAACCCTTCTTCTGCTGCGGATTTCCTCTCCCCGGAGCCTGTTTATCCTCACTACTCAGAGCTTCCAACTTTTGTTAATAAATCAAGTGTTTTCAAGTCTGTGGAGAAGGAGCCAAAAGCTGCTCAGTTGACAATCTTTTATGCTGGACAAGTGGTTGTGTTTAATGATTTTCCCCATGAAAAAATGGAGGAGATAATGTCATTGGCCAGCAAGGGAATGTCTCAAAGCCCAAACTACCATGCATATGCTCACACTAGTCACCATCAAGGAAATCATATTTCCTTTGCTGCTAATGGCCCCCCTCAGCCACCCTCCATACCAATTGTTCGAGATCTTCCAATTGCGAGGAAAGTTTCACTTCATCGGTTTTTCGAGAAGAGGAAAGATAGAATTGCTGCAAAAGCGCCATATCAAATAAACAATCCCAACTCTGCTCCAAATAAGCAGGCCGCAGTATCCATGTCATGGCTTGGATTAGGTGTTCCATCAAAA 732 0.4563 MSTSSDYSGFYANRTAKSPAEKSTFSQTCSLLRQYLKEKGTFGDLTIGMTCTVEANGSPSEISCHSATTMELFPTSFTQRNPSSAADFLSPEPVYPHYSELPTFVNKSSVFKSVEKEPKAAQLTIFYAGQVVVFNDFPHEKMEEIMSLASKGMSQSPNYHAYAHTSHHQGNHISFAANGPPQPPSIPIVRDLPIARKVSLHRFFEKRKDRIAAKAPYQINNPNSAPNKQAAVSMSWLGLGVPSK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00466 244 Pfam tify domain 117 150 IPR010399 -
Lapu3g00466 244 SMART tify_2 116 151 IPR010399 -
Lapu3g00466 244 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 228 IPR040390 -
Lapu3g00466 244 ProSiteProfiles Tify domain profile. 116 151 IPR010399 -
Lapu3g00466 244 Pfam Jas motif 193 218 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00466 Lapu-Chr3 4793717 4795562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00466 1 240 Tify Gene Family AT1G19180 42.366 4.57e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lapu3g00466 tify 4.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00466 K13464 - gmx:100802800 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00466 3 4793717 4795562 Lapu3g00466 3 4793717 4795562 ECH
Lapu3g00466 3 4793717 4795562 Lapu9g00370 9 3914457 3917173 PCT