Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00461 ATGAAGGCTCCATCAAATAGTTTCTTGGCTAATTCTGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAAATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAGCCGTCAACCTACTGAGTTCTTTTGCAAAACACTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTTTGGATTATTCGATGCAACCTCCTGCTCAGGAGCTTGTAGCCAAGGATTTGCACGATAACACATGGGCATTTAGACATATTTATCGAGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGAGCTAACAGACAGCAACCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAACCACAGCCCATTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCGCTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGCCCGATGGAAAAACTCACAATGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCCAGTAGAGTTTCAATTTGGGAAATTGAACCTGTAGTTACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCAAAGTTCCCCAGGCAACCAGGAATGCCAGATGACGAGTCTGATATGGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTGCAGTGGATGAGTATGCAACCGAATAATCATCTCTCAGCAACTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACCCTTCAGGGTAACCTTGGCACCGAAGACCCATCCAAGTTATTGAGCTTTCAAGCTCCTGTTCTCTCATCACCAAGTCTTCAATTAAACAAACCCAATCTACCAAATCAAATCAACCAGCTGCAGCAGTCCCAGCAGCAACAACAGCAACAGTTGCAGCAACAACAACATCAACAACAACAGCAACAGCTGCAGCAGCAACAGCAACAACAGCTGCAGCAACAGCAACAACAGCTGCAGCAACATCAACAGCTGCAGCAACATCAACAGTTGCAGCAACAACAGCAGCTACAGCAACAACATCAGCAGCTTCAGTCATTGTTGCAAATACCAATGAATCATCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGCCATTGCTGCAGCAACTGCCTCAACAGCTAGGACAGCAGCCCCAGAAACAGCAACAGCCAAGTCAACATGCTAGTCTTATGAATAATGGGGTAGTTGCTTCCAACCCGATTACAAGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAACAACAATTACTCTCAGGAGGTATCCAACCCCAGCAAGGTATCCAGTCAGCTAGTAAGAATACGTTCCCATTGACATCCTTACCACATGACTCACAAATTCAACAACAGATAGATCAGCAAGCTAACCTCTTACTGAGGCAACAGCAACAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGAGAGCACCACCACAACAACCGCCTGCCACACAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTGCAGTTGCTACAAAAATTGCAGCACCAACAACAACAGCAACTTCTTTCCACATCCACCCCACTATTGCAGTCTCAGCTTCTTCCACAACAAAATACTCACCAACAAAACCACCAATTAGCGCAGCCCCCACCACCTATATCACATCATCAGCCTCAACAGCTTGGCAATAATACATTCTCCACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCATCCCTTATGCAATCACAACAGATTCCTGTGAACCAATCCCAGAATACACAGAAATCACTTACCATCACCAGAGCCCCCTCTACAATAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTATCTCATCCAAACCTCCTAAAAAGAAATCAGCAACTACCAGCTACATTAGGGGGGAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGACATGCAGAGCAAACATGAGTTGCTCAATCTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATCACTGATCAGCTGGAAGCTTCTTCATCTGGAACATCTTACTGCCTTGACCCGGGAAATGTCCAACAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGCCCAATCACACCCTAGAAACAGTTTACCATTTGACTCTAATCTGGATGATCTAACCCCTGATACTATGCTTTTAAGGGGGTATGACTCTTCAAAAGAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCTGCTTGCTCAAGTGATGTTGTCATCAATGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGCCAACCAAACTCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATCGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATCTGGCTAAAATGTTTGGCATTGAAGGGCAGCTAGATCCTCAGAGGACTGACTGGAAATTAGTATACGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTACAGAGCATAAAGATATTGTCACATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCGAATCCCTAATCAAGCTTGCAGTGGGACAGACAGCGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTAA 3480 0.4466 MKAPSNSFLANSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANHSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPARWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAMPWLGDDFGMKDASSSIFPGFSLVQWMSMQPNNHLSATQSGCFPSMLPSNTLQGNLGTEDPSKLLSFQAPVLSSPSLQLNKPNLPNQINQLQQSQQQQQQQLQQQQHQQQQQQLQQQQQQQLQQQQQQLQQHQQLQQHQQLQQQQQLQQQHQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQLPQQLGQQPQKQQQPSQHASLMNNGVVASNPITSQFVQPPMAYGQLQQQQLLSGGIQPQQGIQSASKNTFPLTSLPHDSQIQQQIDQQANLLLRQQQQQQTQLQQSPLQLLQQNLPQRAPPQQPPATQMLQQNPSEQQLHLQLLQKLQHQQQQQLLSTSTPLLQSQLLPQQNTHQQNHQLAQPPPPISHHQPQQLGNNTFSTEKLLNSNNFSSSSLMQSQQIPVNQSQNTQKSLTITRAPSTITDGDAPSCSTSPSTNNCQVSHPNLLKRNQQLPATLGGSLIVEPTSNLIQELHSKPDMQSKHELLNLKGPDQLKYKGTITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDSNLDDLTPDTMLLRGYDSSKEDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMPFKPACSSDVVINETGVLNNSGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVRIPNQACSGTDSGNAWRGQYEDNSAASFNR* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00461 1159 ProSiteProfiles PB1 domain profile. 1032 1115 IPR000270 GO:0005515
Lapu3g00461 1159 MobiDBLite consensus disorder prediction 789 810 - -
Lapu3g00461 1159 FunFam Auxin response factor 289 361 - -
Lapu3g00461 1159 CDD B3_DNA 125 226 IPR003340 GO:0003677
Lapu3g00461 1159 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Lapu3g00461 1159 MobiDBLite consensus disorder prediction 817 836 - -
Lapu3g00461 1159 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu3g00461 1159 Gene3D - 123 227 IPR015300 -
Lapu3g00461 1159 MobiDBLite consensus disorder prediction 693 714 - -
Lapu3g00461 1159 MobiDBLite consensus disorder prediction 634 657 - -
Lapu3g00461 1159 FunFam Auxin response factor 1027 1120 - -
Lapu3g00461 1159 Coils Coil 481 535 - -
Lapu3g00461 1159 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lapu3g00461 1159 SUPERFAMILY CAD & PB1 domains 1045 1110 - -
Lapu3g00461 1159 Gene3D - 289 360 - -
Lapu3g00461 1159 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lapu3g00461 1159 SMART B3_2 126 228 IPR003340 GO:0003677
Lapu3g00461 1159 Pfam AUX/IAA family 1029 1118 IPR033389 -
Lapu3g00461 1159 FunFam Auxin response factor 124 228 - -
Lapu3g00461 1159 Gene3D - 1028 1120 - -
Lapu3g00461 1159 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 582 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu3g00461 1159 MobiDBLite consensus disorder prediction 748 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00461 Lapu-Chr3 4744757 4752813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00461 1 486 B3 DNA Binding Superfamily AT5G20730 80.202 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu3g00461 AUX_IAA 2.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00461 K14486 - gmx:100805456 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00461 3 4744757 4752813 Lapu3g00461 3 4744757 4752813 ECH
Lapu3g00461 3 4744757 4752813 Lapu9g00365 9 3847949 3856550 PCT