Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00448 ATGATGGGTCACGTTGAAAGTGGAGCTACATTTTTTGCTGCACTTACACTGGCACTCCACCTCGTTACAGCAACCACTCTTTTCTCTCTCCACTCTTCCTTAGACAGCGCCGTTAGAGTCATTAGGGTTCGTGGAGATGGCGCCGGGGACTTTAGGACAGTGACGGAGGCCGTGAACAGCATTCCGTCAGGTAACAAGCAGCGAGTGGTAGTGTGGATCGGCATGGGCGAGTATCGGGAGAAGGTCACCGTGGATAGGTCCAAACCTTTCGTTACCTTTTATGGAGAGAGGAATGAGAGCGACACCCACACCATGCCCATCATAACGTACCACGCCACCGCGTTATGGTATGGGACAGTGGACAGCGCCACCGTCGCTGTCGACTCCGACTACTTCGTCGCTGTCAATATCGCTTTTGTGAACTCGTCTCCAAGGCCAGATGAAAATAGTGTTGGAGCACAAGCATTAGCCATGAGGATATCCGGGGACAAGGCTGCATTCTACAACTGCAAGTTCGTTAGTTTTCAGGACACTTTATGTGATGATAAAGGCAGACATTTTTTCAAGGACTGCCACATCCAAGGTTCCTACGATTTCATATTTGGAAATGGAAAATCCATCTACTTGGTTGGTATATATAGAAGTACCATTGAATCGGTTGCAAAGGGTTTGAGTGTTATCACAGCACAAGGTAGGGAAAGCATTGCAGAAGATACTGGATTCACTTTCCTGCACTGCAACATTACGGGAAGGGGTAACAGGAACACTTACCTTGGGCGTGCCTGGAAGAAGAGCCCTAGAGTCGTATTTGCTTACACGTACATGGGCTCCCTCATCAATGCCCGGGGATGGTTCACCAATGAATTTCCTCAACCCAACTCCAACCAGACAATCTACTATGGAGAATATAGGTGCATGGGAGCAGGAGCTGTTTCCTCTGGGCGTGTAAAATTTCGGAAGATATTGTCTGACGAAGAAGCAAAGCCCTTCATGAGCCTGGCCTATATTCATGGAGGAAAGTGGGTTGTCCCACCTCCAGAGCTGTGA 1047 0.4881 MMGHVESGATFFAALTLALHLVTATTLFSLHSSLDSAVRVIRVRGDGAGDFRTVTEAVNSIPSGNKQRVVVWIGMGEYREKVTVDRSKPFVTFYGERNESDTHTMPIITYHATALWYGTVDSATVAVDSDYFVAVNIAFVNSSPRPDENSVGAQALAMRISGDKAAFYNCKFVSFQDTLCDDKGRHFFKDCHIQGSYDFIFGNGKSIYLVGIYRSTIESVAKGLSVITAQGRESIAEDTGFTFLHCNITGRGNRNTYLGRAWKKSPRVVFAYTYMGSLINARGWFTNEFPQPNSNQTIYYGEYRCMGAGAVSSGRVKFRKILSDEEAKPFMSLAYIHGGKWVVPPPEL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00448 348 FunFam Pectinesterase 36 344 - -
Lapu3g00448 348 Gene3D - 39 345 IPR012334 -
Lapu3g00448 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 30 342 - -
Lapu3g00448 348 SUPERFAMILY Pectin lyase-like 39 342 IPR011050 -
Lapu3g00448 348 Pfam Pectinesterase 43 338 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00448 Lapu-Chr3 4610496 4612788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00448 35 348 Carbohydrate Esterase AT5G07410 50.637 8.28e-116 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00448 K01051 - gmx:100790786 564.303