Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00436 ATGGAGGGATTCGAAGGGACGAACGGCATTGTGAAGGGTTTGGTATCCGCTGGCATAGGCGAAGTGGTGTCGTTGGTGGAGCAGCTTCTTGCACAGGTGGTGCCCTTACACGATGAATTTGACGCGAGCAAGGGGCAATTTCCCTCGTGGGTTAAACCCAAGGAAAGGAAGCTTCTGCAATCGATTGGAGTGACTCCTGATGCTGTGGTAGCTTTGGATGGGAGTGGGAACTACGCTAGGATCATGGATGCGGTGCTTGCGGCACCCGATTACAGCATGAAACGGTTTGTGATTTACATAAAGAAAGGTGTTTATGTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGGTTGGAGATGGGATGAACGCCACCGTAATCTCCGCTGTGAGTGGCAGAGGGTTCATAGCTAGAGACATTTCCTTTCAGAACACGGCAGGGCCTGAGAAGCACCAAGCAGTGGCACTGAGATCAGACTCAGACCTCTCAGTGTTCTACCGATGTGGGATTTTCGGTTTCCAAGACAGCCTATACACCCACACAATGCGCCAGTTCTTCAGAGAATGCAGAATAACAGGCACAGTGGACTTCATCTTCGGCGACGCCACTGCCGTGTTCCAGAACTGCTCAATACAAGCCAAGAAGGGCTTGCCAAATCAGAAAAACACGATCACAGCACACGGTAGAAAAGACCCAAATGAGCCAACAGGTTTCTCATTCCAGTTCTGCAACATCACTGCAGACTCTGACCTTGCACCCGTGGTCAGCACCATTCAAACGTATCTGGGCAGACCCTGGAAGACTTACTCACGAACCGTTTTCATGCAATCGTTCATGAGTGAGGTGATAAGGGCAGAGGGGTGGTTAGAGTGGAATGGAAACTTTGCTTTGGACACATTGTATTATGCCGAGTACCTGAACACTGGGGCAGGTGCTGGCACAGCTAACCGTGTGAAATGGACAGGGTACCATGCATTGAATGATTCAAACCAGCCTCTTTCTTCTTATTGTTCGTGTAACAGTAATTTCATGGCTCTTGCATCTCCTAAACTTTTCCTCCTCCTTTTAACATTCTTCTTGTCACATGCTATAGCTATTGAGTCCTCCAATGCTTTCACAAGCACAACTTTCCATGCAAACCTCTCTTCCTTAAATAGAACAAACTTATTTCCTGAAGTTAGCTTCGATTCATCTAAGCTTTCCATCTCAATAAACATAAATCCAAACATTATCAACACTCTTCTTCAGTTCCTCCAAGCAGCAATATCTGAAGCCACAAAACTATCTGATCTTTTAAACAATGCAGGACACTCAAGCATCGTAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAGCTTCCTTAAAACGATCACTATCAGGGATCCGTTCCCAAGATTCCATAAAATTAGTCGATGCAAGAACCTACCTCAGTGCAGCCCTCACCAACAAAGTCACGTGTCTAGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTAGTGAATTCTGTGATCAACTCTTACAAGCATGTCAGTGACTCTCTTTCAATGCTCCCCAAGCCTGAGAAGAAGGCTTCCCAAGGACACAAGAATCGGCGTTTGTTGTGGTTGTCAAGGAAAAACCACCGCTTCTTGCAAGGCAATGATGGGGTGATTGTTGTAGCTGCAGATGGAACAGGGAAGTTTAGCACCATCACTGAGGCTATCAACTTTGCTCCAAATAACAGCGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGCCACTGTTATCACTGGCAGCAGAAGTGTTATTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTCTCTGGTGAGGGTTTTCTTGCACGTGATATTGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTGAGAGTAAATGCAGACTTCACAGCTTTCTACAGGTGTGCCATGTATGGTTATCAAGACACTCTTTATGTGCACTCCTTTAGACAATTCTATAGAGAGTGTGATATTTTTGGGACCATAGATTACATATTTGGGAATGCAGCAGTGGTTTTACAAGCATGCAACATTGTGTCCAGGATGCCAATGCCTGGCCAATTCACTGTCATCACTGCACAGTCCAGAGATTCCCCTGACGAGGACACTGGCATTTCGATCCAAAACTGCTCAATTCTAGCCACCACAGACTTGTACTCCAATTCTGGTAGTGTCAAGAGCTACCTAGGAAGGCCATGGAGGGTTTATTCTCGTACTGTGTACCTCGAGTCCTACATTGATACATTTATTGACCCAGTGGGGTGGACCCAGTGGTCTGATGATGAAGGATTGGACACTTTGTATTATGGAGAGTATGCCAATTATGGGCCTGGTTCAGGGACTGATAACAGAGTAGATTGGGCTGGGTATCACTTAATGGATTACAACAGTGCCTATAACTTCTCAGTTTCTGAATTTATTATCGGTGATGCTTGGCTTGGGTCTACATCATTCCCTTATGATAATGGGATTTAA 2622 0.4558 MEGFEGTNGIVKGLVSAGIGEVVSLVEQLLAQVVPLHDEFDASKGQFPSWVKPKERKLLQSIGVTPDAVVALDGSGNYARIMDAVLAAPDYSMKRFVIYIKKGVYVENVEIKKKKWNIMMVGDGMNATVISAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGFQDSLYTHTMRQFFRECRITGTVDFIFGDATAVFQNCSIQAKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLAPVVSTIQTYLGRPWKTYSRTVFMQSFMSEVIRAEGWLEWNGNFALDTLYYAEYLNTGAGAGTANRVKWTGYHALNDSNQPLSSYCSCNSNFMALASPKLFLLLLTFFLSHAIAIESSNAFTSTTFHANLSSLNRTNLFPEVSFDSSKLSISININPNIINTLLQFLQAAISEATKLSDLLNNAGHSSIVENKIGAVQDCRELQQSTLASLKRSLSGIRSQDSIKLVDARTYLSAALTNKVTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEKKASQGHKNRRLLWLSRKNHRFLQGNDGVIVVAADGTGKFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDATVITGSRSVIDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIVSRMPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSNSGSVKSYLGRPWRVYSRTVYLESYIDTFIDPVGWTQWSDDEGLDTLYYGEYANYGPGSGTDNRVDWAGYHLMDYNSAYNFSVSEFIIGDAWLGSTSFPYDNGI* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00436 873 SUPERFAMILY Pectin lyase-like 561 870 IPR011050 -
Lapu3g00436 873 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Lapu3g00436 873 SMART PMEI_2 367 529 IPR006501 GO:0004857
Lapu3g00436 873 Pfam Pectinesterase 67 334 IPR000070 GO:0030599|GO:0042545
Lapu3g00436 873 Pfam Pectinesterase 564 859 IPR000070 GO:0030599|GO:0042545
Lapu3g00436 873 SUPERFAMILY Pectin lyase-like 64 335 IPR011050 -
Lapu3g00436 873 Gene3D Invertase/pectin methylesterase inhibitor family protein 390 532 IPR035513 -
Lapu3g00436 873 NCBIfam pectinesterase inhibitor domain 412 530 IPR006501 GO:0004857
Lapu3g00436 873 FunFam Pectinesterase 558 873 - -
Lapu3g00436 873 Pfam Plant invertase/pectin methylesterase inhibitor 421 529 IPR006501 GO:0004857
Lapu3g00436 873 FunFam Pectinesterase 61 347 - -
Lapu3g00436 873 FunFam Pectinesterase 380 532 - -
Lapu3g00436 873 ProSitePatterns Pectinesterase signature 1. 92 111 IPR018040 -
Lapu3g00436 873 Gene3D - 561 873 IPR012334 -
Lapu3g00436 873 Gene3D - 62 341 IPR012334 -
Lapu3g00436 873 CDD PMEI-like_3 392 535 - -
Lapu3g00436 873 PANTHER PECTINESTERASE 408 863 - -
Lapu3g00436 873 ProSitePatterns Pectinesterase signature 2. 707 716 IPR033131 -
Lapu3g00436 873 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 412 530 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00436 Lapu-Chr3 4431332 4443133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00436 385 873 Carbohydrate Esterase AT2G26440 65.882 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00436 - K01051 gmx:102666380 891.338