Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00431 ATGGGGTTCTACGTTGAAGACCCTCTCTCTGGCTTGACAATAGGGCAGGCCATATACGAGGTAGCTCTCATCATTGCGGTTCTGAGATGGGTCTTGTGCTTGCTCTTCAGACTCATCAACGACAGAAGGACGACGTCTGAAGACACCACACCTGAACCTTGTCCTCAGACGACAAGGGACAGGGACAGCACCCTTGTGCTGACCACGTTCGGAGAGATTAAGGAGAGGCTGCCACAGACAGAGGACACGTGTGCGGTTTGCCTGAGCCAGCTGGAAGTGGAGGACGAGGTTCGAGAGCTCTTGAACTGTTACCACGTGTTCCACAGAGAGTGCATAGACCGATGGTTGGAGCATGAGCACGAGAATCACAACCCCACGTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACAACTCTACCACGTGTCAGCCTCCTCCTCAGCCCAGTTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGGGATGATTTGCTACCTTGTTAG 513 0.538 MGFYVEDPLSGLTIGQAIYEVALIIAVLRWVLCLLFRLINDRRTTSEDTTPEPCPQTTRDRDSTLVLTTFGEIKERLPQTEDTCAVCLSQLEVEDEVRELLNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHNSTTCQPPPQPSWAVERLLYLFGDDLLPC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00431 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 136 IPR013083 -
Lapu3g00431 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 168 - -
Lapu3g00431 170 Pfam Ring finger domain 82 131 IPR001841 -
Lapu3g00431 170 SUPERFAMILY RING/U-box 78 137 - -
Lapu3g00431 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Lapu3g00431 170 SMART ring_2 84 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00431 Lapu-Chr3 4371540 4372453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00431 1 167 C3H Transcription Factor Family AT5G20885 49.171 1.01e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00431 K16281 - gmx:100306203 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00431 3 4371540 4372453 Lapu3g00431 3 4371540 4372453 ECH