Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00430 ATGTCAACAGCAGAAGCTCCTCAATTCCAAGAAGCAGCACGATGTGTTGTCTGCAATTGCGGTTTCAACACCTTCAGAAGAAGGCATCACTGTCGATCCTGTGGGAGAACATTGTGCAATGAACATTCATCAAATCAAATGGCTTTACCACAATTTGGGATTTACTCAAACGTTCGAGTATGTGCTGATTGTTTCAATAACTCATGGTCTGGAAAGGATGTACCACAGGGTTCTTCGGACAGAGCTAACAGTGTGACGGATACAATTTCAAAATTAGATATTAATGCAAATGTTGATTCAAAATCCATACCAACTGCAGAGAATAATCTTGTATCAGGCATTAAAGAATGTAAGTGTGGAATGCCACTTTGTATTTGTGAAGCTCCCGCCCCTTCTTCTGATCCACCCCCTCAACAGAGGAAACCCAGTCCAGTTATTGGAGCTCCATCAAATCCTAAACCTAAGAAAACAGATACTGTTCCGAAAAATAGAAGCTCCAGTTCAACAAGCAAATTTAGTTCTATGAATGTTACGTCAGACAGACCTCAAATTGATTATGAAGTTAGTGGGGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACCTTGCTGCTGTTAAGAAACTTCTTAACGAGGGTGTGGATGCAAATTACAAGGACAAGCAAGGACTATCTTTACTACATTTGGCTGCAGTCTTCAATCAAACCGATATAGTTTTCACTCTCATGGAATCGGGGGCAAGCCTGGAGTACAAAAATGCTCAAGGAGAAACACCTTTAGATTGTGCACCAGCTACATTGCAATACAAAATGCGAAAAAGGATGGAAGAAGGTGGAGCAATGGACTAA 846 0.4078 MSTAEAPQFQEAARCVVCNCGFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGIYSNVRVCADCFNNSWSGKDVPQGSSDRANSVTDTISKLDINANVDSKSIPTAENNLVSGIKECKCGMPLCICEAPAPSSDPPPQQRKPSPVIGAPSNPKPKKTDTVPKNRSSSSTSKFSSMNVTSDRPQIDYEVSGEGLREAIKNGDLAAVKKLLNEGVDANYKDKQGLSLLHLAAVFNQTDIVFTLMESGASLEYKNAQGETPLDCAPATLQYKMRKRMEEGGAMD* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00430 281 ProSiteProfiles Ankyrin repeat profile. 193 220 IPR002110 GO:0005515
Lapu3g00430 281 ProSiteProfiles Ankyrin repeat region circular profile. 221 252 - -
Lapu3g00430 281 SUPERFAMILY FYVE/PHD zinc finger 11 73 IPR011011 -
Lapu3g00430 281 MobiDBLite consensus disorder prediction 131 183 - -
Lapu3g00430 281 Pfam Ankyrin repeats (3 copies) 195 262 IPR002110 GO:0005515
Lapu3g00430 281 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 2 278 - -
Lapu3g00430 281 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Lapu3g00430 281 MobiDBLite consensus disorder prediction 161 183 - -
Lapu3g00430 281 SUPERFAMILY Ankyrin repeat 194 265 IPR036770 -
Lapu3g00430 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Lapu3g00430 281 Gene3D - 169 269 IPR036770 -
Lapu3g00430 281 SMART ANK_2a 188 217 IPR002110 GO:0005515
Lapu3g00430 281 SMART ANK_2a 221 250 IPR002110 GO:0005515
Lapu3g00430 281 MobiDBLite consensus disorder prediction 131 149 - -
Lapu3g00430 281 Pfam FYVE zinc finger 10 67 IPR000306 GO:0046872
Lapu3g00430 281 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Lapu3g00430 281 SMART fyve_4 1 70 IPR000306 GO:0046872
Lapu3g00430 281 CDD FYVE_scVPS27p_like 8 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00430 200 279 MAP Kinase Kinase Kinase AT3G58760 33.750 1.74e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00430 - - gmx:100814367 484.952