Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00429 ATGGCTGGTTTGAACCCCGTGGCAGGAGAAGGGTGGAAGGTTTATCCTTCTTCTGCTATGGAGATTGGTATTGATAGTGTTGATGGAAGGAGTGAGAACATGGAGGTCCACAACACCATAACTGGAGATTTCTCTGCTAGCAGGCCAGTGGCAGTGCCATCATCTGGACATATTAAAGTGATTCCTAGTCCAACCAAGTTTACCATCCTCTATAAGGGGAATATGTGTGTTTATGAAGGGATTCCGGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGGTCCCTTGGACTTCACTCATTTCCAAAAGGACTTCTTCTCCACAGGGAAACTCTACTAACTGTGCAAAGAAGAGTTCCATTCGCAGGCTGCAAGATGAATTTCCACTAGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAGCAAAACCCCTTACGCCTCAACAAAAAACATGGCTCACAACACAGAGAACAGCTTCTTTTCTGACATGTCACATTTTGGTTCCTTGAACTATCAGAAGAGGAATTTCAGCCCAGTGTTATCGCCTCTTTAA 609 0.445 MAGLNPVAGEGWKVYPSSAMEIGIDSVDGRSENMEVHNTITGDFSASRPVAVPSSGHIKVIPSPTKFTILYKGNMCVYEGIPAEKVREIMLIASVSAKSAEMKSGVPWTSLISKRTSSPQGNSTNCAKKSSIRRLQDEFPLARRQSLQRFLEKRRNRLASKTPYASTKNMAHNTENSFFSDMSHFGSLNYQKRNFSPVLSPL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00429 202 SMART tify_2 60 95 IPR010399 -
Lapu3g00429 202 Pfam Jas motif 140 164 IPR018467 -
Lapu3g00429 202 Pfam tify domain 62 94 IPR010399 -
Lapu3g00429 202 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Lapu3g00429 202 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 61 171 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00429 Lapu-Chr3 4339421 4342410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00429 13 167 Tify Gene Family AT5G20900 31.707 6.84e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lapu3g00429 tify 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00429 K13464 - gmx:100306282 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00429 3 4339421 4342410 Lapu9g00337 9 3508910 3513771 PCT