Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00420 ATGTTTTTGTTTCTGTTGGCAATGAGCCAGAGAAGCCAGGGCTGTGGAGGCATGAAGCTACTAAGGATGTTTTTGTTTGTGGGGTTGGTGATTGTGAAATGGGTGGAAGGCTTGGAGGATAGTAATGTGACAGACATAGATATGCTATATGTCAGTGGAAGAGGTTTCTACAGACCTTTGACGGTTGGGCTTACTCTTATTAATGGTGCTGCTGCTAAAGGAGCTGTCTGCCTGGATGGATCTTTACCAGGTTACCACTTTCATCGTGGATACGGTTCTGGATCAAACAGTTGGCTTATACAATTGGAGGGAGGAGGCTGGTGTGGAACTATAAAAAATTGCCTTTACAGTAAGAAAACACGTCATGGTTCTTCATTCTTTATGGAAAAACAAATACCATTTATTGGGATATTGAGCAACAAAGCTGAGGAAAATCCAGATTTTTTCAATTGGAATAGAATAAAAGTCCGTTATTGTGATGGTGCATCGTTTAGTGGGGACAGTCAAAATGCGGGAGCAGGATTGTATTTCAGAGGGCAACGCATTTGGCAAGCTGCTATGGAAGATCTAATGTCAAAAGGAATGCGCAATGCCAAACAGGCTCTTCTATCTGGATGTTCTGCAGGAGGTTTAGCTACTATTATACATTGTGATGAATTTCGGGAATTGTTTCCTAGAACCACAAGAGTAAAATGCTTGAGTGATGCAGGATTGTTCCTTGATTCTGTTGATGTATCTGGCCATCGCAGCTTAAGGAATTTGTTTGGAAGTGTGGTCACCTTACAGGGAGTGCGAAAGAGCCTTCCAAGAAGTTGTACCAGTCGCCTCAATCCAATTTTGTGCTATTTCCCTCAGCACTTAATTGCCAGTGTTAGGACACCACTGTTTCTTCTCAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTTGCTCCACCATCTGCTGACTACCGATGGAACTGGTATGAATGCAGAAAAGATTATGCACGTTGCAGTGCACCACAGATACAGTATCTTCAAGGTTTTCGGAATCAGATGCTTAGATCTACAAGAGCCTTCTCACGGTCTTACAAAAATGGGTTATTCATAAATTCATGTTTCGCTCATTGTCAATCAGAAAGACAGGATACGTGGTTTGCTCGTGATTCTCCTCGCATTGGAAATAGAGGAATTGCAGAGTCTGTTGGGAACTGGTTTTTTGACCGAGTTAGTGTCCAGGCTATTGGTTGTCCTTACCCTTGTGACAAAACCTGCCATAATTTGGTATTCAAGTGA 1278 0.4241 MFLFLLAMSQRSQGCGGMKLLRMFLFVGLVIVKWVEGLEDSNVTDIDMLYVSGRGFYRPLTVGLTLINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTIKNCLYSKKTRHGSSFFMEKQIPFIGILSNKAEENPDFFNWNRIKVRYCDGASFSGDSQNAGAGLYFRGQRIWQAAMEDLMSKGMRNAKQALLSGCSAGGLATIIHCDEFRELFPRTTRVKCLSDAGLFLDSVDVSGHRSLRNLFGSVVTLQGVRKSLPRSCTSRLNPILCYFPQHLIASVRTPLFLLNAAYDTWQIQASLAPPSADYRWNWYECRKDYARCSAPQIQYLQGFRNQMLRSTRAFSRSYKNGLFINSCFAHCQSERQDTWFARDSPRIGNRGIAESVGNWFFDRVSVQAIGCPYPCDKTCHNLVFK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00420 425 PANTHER NOTUM-RELATED 52 421 IPR004963 GO:0016787
Lapu3g00420 425 Pfam Pectinacetylesterase 60 404 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00420 Lapu-Chr3 4259124 4265087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00420 62 425 Carbohydrate Esterase AT1G57590 68.681 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00420 K19882 - gmx:100791571 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00420 3 4259124 4265087 Lapu3g00420 3 4259124 4265087 ECH
Lapu3g00420 3 4259124 4265087 Lapu6g00946 6 9644565 9649115 ECH
Lapu3g00420 3 4259124 4265087 Lapu7g00495 7 5594119 5599055 ECH