Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00411 ATGGACGTGGAGGACTGGGATTTGAGCGCAGAGGACCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAGATTGCGCAACTACGCAACCCTCCTCCTCCTCCTCCGTACGAACATCACAATTCTTCAATTGCAGCAACGCATCACTTCCCACCAAAACCCCTTCCCAATTCGCGCCCCCAAACTGTTGGTGCTTCGTCTAAAGGAGCAAGAGCATTACCCACGTCATTAAAATCAGGGACAGATAACGCTTTATGTTTTGCAGACGAACATACAAAAAAAGGACTGATAAAGTTTTCAGTAAAGTTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAGTTGCTGCATTTCGAAAAATCCCTAAATCTTCTTGGAATGCAAGGGAACGGTTATGGATATTCCCACTATCTTCCTTGTCAGAAGCAGAGAAGTTTCTTGGAGAAGTATCAGGCTATAATGTCCAGGTTGAACACCTAGATCCCTTAGTGCAACGTGCCATTGATGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGGTACCATAAGATCCCTAGTTATATCGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAACATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACATTGCAAGCCATTGCTGTAGCGTCTTGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGAAGGTTTCAATATCATATCTTCAAGTGCTAAAAACAGCATTCGTCTGGATGGACTATTCAACATCATCTCATACGATTTGGTGCCAAAGCTACAGAATATGCTTATGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTACTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATACAAGAATGTTCATGAATATGGTAGCCGGTACTGCAAGGGTGGTTTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATGAAGGCAACAGTGTTGATTCGCAGGCTTAAAAATGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATTCTTTATTTCGAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATCAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGTTGTAAGTTTCTTATATTTGCACACCATCTGCCAATGCTTGATTCAATACACGAGTTTCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGGTCACAGAGTTTCAGGAAAAAGATTCTATAAAAGCAGCAGTGCTATCCATTAAAGCTGGAGGCGTTGGATTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCGGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCAAATGACACGGTTGATGACATCATGTGGGACGTAGTACAAAGCAAACTGGAAAATCTGGGGCAGATGCTAGACGGTCATGAAAAGGCCTTGGAGGTCTCAGCTAGTCTGCCAGAGAATAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGACCTGAAAACATGGATAGCCCTTCAAAGCAGAAAACACTAGACCAGTTTGTTAGGAGATGTGATAACATGGATAGGTTGAAACTTGAGCCCAACACCAAACGTCCCCGAAACTGA 2130 0.4192 MDVEDWDLSAEDLDSLERDAFQKIAQLRNPPPPPPYEHHNSSIAATHHFPPKPLPNSRPQTVGASSKGARALPTSLKSGTDNALCFADEHTKKGLIKFSVKFFLHSSGNIAAKFQYDQVVVAAFRKIPKSSWNARERLWIFPLSSLSEAEKFLGEVSGYNVQVEHLDPLVQRAIDAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNREGFNIISSSAKNSIRLDGLFNIISYDLVPKLQNMLMTCDFKVVIADESHFLKNAQAKRTTATLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGSRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKNDVLSQLPVKRRQQVFLDLADKDMKQINSLFRELEMVKAKIKAAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHLPMLDSIHEFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIMWDVVQSKLENLGQMLDGHEKALEVSASLPENSPSKQKTLDQFVRRPENMDSPSKQKTLDQFVRRCDNMDRLKLEPNTKRPRN* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00411 709 SMART helicmild6 524 607 IPR001650 -
Lapu3g00411 709 Pfam SNF2-related domain 216 476 IPR000330 GO:0005524|GO:0140658
Lapu3g00411 709 SMART ultradead3 194 387 IPR014001 -
Lapu3g00411 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 649 IPR027417 -
Lapu3g00411 709 MobiDBLite consensus disorder prediction 25 73 - -
Lapu3g00411 709 Pfam Helicase conserved C-terminal domain 508 607 IPR001650 -
Lapu3g00411 709 Gene3D - 170 427 IPR038718 -
Lapu3g00411 709 FunFam Chromatin remodeling factor18 171 445 - -
Lapu3g00411 709 Coils Coil 450 470 - -
Lapu3g00411 709 ProSiteProfiles HARP domain profile. 92 168 IPR010003 -
Lapu3g00411 709 Gene3D - 457 696 IPR027417 -
Lapu3g00411 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 421 IPR027417 -
Lapu3g00411 709 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 379 IPR014001 -
Lapu3g00411 709 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 650 IPR001650 -
Lapu3g00411 709 CDD SF2_C_SNF 494 618 - -
Lapu3g00411 709 MobiDBLite consensus disorder prediction 58 73 - -
Lapu3g00411 709 FunFam Chromatin remodeling factor18 456 678 - -
Lapu3g00411 709 CDD DEXHc_HARP_SMARCAL1 198 421 - -
Lapu3g00411 709 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00411 Lapu-Chr3 4145979 4156440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00411 478 625 RAD5 or RAD16-like Gene Family AT1G05120 30.921 5.34e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu3g00411 SNF2_N 7.1e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00411 K14440 - gmx:100778246 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00411 3 4145979 4156440 Lapu3g00411 3 4145979 4156440 ECH
Lapu3g00411 3 4145979 4156440 Lapu3g02504 3 47032285 47033784 PCT