Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00408 ATGGCAAGGCATCAAGATTCCAAGAAGAACAAGATGAAGGGCGAAAGCAACAAAACAGTACCCTATTACCAACTTTTTTCATTCGCAGACTCTTCAGATTATCTACTGATGTTTGTTGGGACAGTAAGCGCTGTTGGGAATGGAATAACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGATGCTTTTACAGGAAATGGTAACACTAAACATTTAGTTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCACTAATAGGCGTAGCTTCCTTTCTGACAGCTTTTCTACAGGTGGCTTGTTGGGTGTCCACTGGGGAGAGGCAGGCTGCGAGAATAAGAGGCTTGTACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGATACCAATACTAGTGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGGCATGCTTTTTAGGAGGTATAGCCATAGCATTTATCAAGGGTTGGCTTCTAACTCTTGTCCTTCTATCTTGTATTCCACCTCTTGTTTTCTCCGGTTCCATAATGAGCTTTGCGTTCGCAAAGTTGGCATCCCGCGGACAAGCAGCTTATTCTGAAGCAGCAACTGTAGTAGATCGCACGATTGGTTCAATTAGAACTGTTGCATCATTTACGGGCGAGAATGAAGCCATAGCTCAATACAGTCAAACATTAACCAAAGCTTACAGCACTGCAGTGCAAGACGGAATGGCTGCTGGTTTAGGCCTTGGTTCAATCCGTTTAGTTATTAACAGCAGCTTTGCATTGGCTGTATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGCTATACAGGAGGTGAAGTCATGAGTATATTTTACGCGCTCTTTTTTGGCTCCATGTCGTTGGGGCAGGCTTTTACAAGTTTAACTGCATTTACTGCAGGACAGGCTGCCGCCTTTGAAATATTTGAAACAATAAATAGGCAGCCAAACATTGATGCTTACGATACTTCAGGTCGACAGGTAGCTGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTTGCTATCCTTCAAGACCAGATGAATTGATATTCAATGGATTTTCCCTTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATTGAGAGATTTTATGATCCGCAAGCCGGTGAAGTTCTCATTGACGGTATCAACCTCAGAGAATTTCAATTGAAATGTATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGCTTATGGTAAGGAGGGGGCAACAGATGAAGAAATCAGAGCTGCAATTGAACTTGCTAATGCAGCTAAATTCATATATAGATTTCCACATGGACATGATACGATTGTCGGCGAGCATGGTACACATCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCAAGGGCAATTCTGAAAGATCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCTGAGTCTGAGAGAGTGGTGCAAGAGACACTGGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACATCGCCTAAACACAATAAGGAATGCCGATACCATTGCTGTTATTCATCAAGGACGAGTAGTAGAAAAAGGTAGATATACTATGTTCCTACATGAATGGAACTCATTATGA 1773 0.4174 MARHQDSKKNKMKGESNKTVPYYQLFSFADSSDYLLMFVGTVSAVGNGITKASTNIVMGEAIDAFTGNGNTKHLVHEVSKVSLKFALIGVASFLTAFLQVACWVSTGERQAARIRGLYLKAILRQDISFFDKDTNTSEVVGRMSGDTVLIQEAMGEKVGKFIQCVACFLGGIAIAFIKGWLLTLVLLSCIPPLVFSGSIMSFAFAKLASRGQAAYSEAATVVDRTIGSIRTVASFTGENEAIAQYSQTLTKAYSTAVQDGMAAGLGLGSIRLVINSSFALAVWFGGKMVLEKGYTGGEVMSIFYALFFGSMSLGQAFTSLTAFTAGQAAAFEIFETINRQPNIDAYDTSGRQVADISGDIELREVCFCYPSRPDELIFNGFSLSISSGTTAALVGKSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKCIRQKIGLVSQEPVLFTGSIKENIAYGKEGATDEEIRAAIELANAAKFIYRFPHGHDTIVGEHGTHLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVEKGRYTMFLHEWNSL* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00408 590 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 333 - -
Lapu3g00408 590 SMART AAA_5 387 573 IPR003593 GO:0016887
Lapu3g00408 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 584 IPR027417 -
Lapu3g00408 590 Pfam ABC transporter 379 527 IPR003439 GO:0005524
Lapu3g00408 590 SUPERFAMILY ABC transporter transmembrane region 25 344 IPR036640 GO:0005524|GO:0016020
Lapu3g00408 590 Gene3D ABC transporter type 1, transmembrane domain 24 349 IPR036640 GO:0005524|GO:0016020
Lapu3g00408 590 Pfam ABC transporter transmembrane region 37 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00408 590 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00408 590 Gene3D - 350 582 IPR027417 -
Lapu3g00408 590 FunFam ABC transporter B family member 9 24 356 - -
Lapu3g00408 590 FunFam ABC transporter B family member 1 350 590 - -
Lapu3g00408 590 CDD ABC_MTABC3_MDL1_MDL2 360 578 - -
Lapu3g00408 590 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Lapu3g00408 590 PANTHER ABC TRANSPORTER B FAMILY 5 582 IPR039421 -
Lapu3g00408 590 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 590 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00408 Lapu-Chr3 4124147 4131397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00408 30 584 Calmodulin-binding Proteins AT2G36910 37.567 2.47e-112 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00408 K05658 - gmx:100798707 983.786