Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00407 ATGTCACAATCTGGCTTCATGGCCCCAGGTGCGAGCAAAGCAAAAAGTTCTGTTGCTTCTATATTTGCTATTCTTGAGCAAAAATCAAACATAGACCCCAGTGATAAGTCCGGAATGATGTTGCAAGAAGTGAGAGGAGAAATTGAGTTCCGCCATGTCACTTTCAAGTATCCAACCAGGCCTGATGTGCTTGTATTTAGAGATCTTTCCTTGACCATTCATGCAGGAGAGACAGTAGCTCTGGCTGGAGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTGCTGCAAAGATTTTATGACCCAGATTCGGGGCAGATAACACTGGATGGAACGGAAATAAAAAATCTACAACTCAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAACCTGTATTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAGCAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGTACACAAGTTCATTAGCAGCTTGCAGCAGGTAACCTACACACTACTCAACGAAAACTCATTGTAA 561 0.4314 MSQSGFMAPGASKAKSSVASIFAILEQKSNIDPSDKSGMMLQEVRGEIEFRHVTFKYPTRPDVLVFRDLSLTIHAGETVALAGESGSGKSTVISLLQRFYDPDSGQITLDGTEIKNLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDAAEAEIIAAAELANVHKFISSLQQVTYTLLNENSL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00407 186 FunFam Cullin-associated NEDD8-dissociated protein 1 38 123 - -
Lapu3g00407 186 Gene3D ABC transporter type 1, transmembrane domain 11 37 IPR036640 GO:0005524|GO:0016020
Lapu3g00407 186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 184 IPR027417 -
Lapu3g00407 186 Pfam ABC transporter 67 169 IPR003439 GO:0005524
Lapu3g00407 186 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 12 183 IPR039421 -
Lapu3g00407 186 SMART AAA_5 75 186 IPR003593 GO:0016887
Lapu3g00407 186 Gene3D - 38 180 IPR027417 -
Lapu3g00407 186 FunFam Uncharacterized protein 9 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00407 Lapu-Chr3 4123802 4131397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00407 7 186 Calmodulin-binding Proteins AT2G36910 47.514 1.52e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00407 K05658 - gmx:100798707 298.13