Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00405 ATGGAGTCGTTTCCATATTGCACGTATGCTGAACTCACTATAGATCCTAATGGAGCATTTACCCAGCTCATTAGATTGCAAGAAATTAAAAGGGAGTCAGAACAGCACGATGCAAATGACTCAGGCCAGCCAGAAAACTCAATAGATTCTGAACAACAATTGAGCCAACAACTTTCTTTGCCTCAATCTTTAAGCCATCAATCATCTGGAAGAGAAAACAACAGTCAGCACTCATTCAAAACGTCTAATGCGATGCCTATCACACTAGATCGCTTTCAAACATCAGAAGAATGGCCTAAAGTTCTCCCGTCAGCAGCATTGCATAAGCCTCGAGAAGTTTCATTTGTTCGCATTGCTTATCTTAACAAACCTGAAATTCCAGTGTTACTCATGGGGACTCTAGCAGCAGCTGCAACTGGCGCAATACTACCCACTATGGGTCTTCTTCTTTCTCACTGGATAAAAACTTTCTTTGAGCCTGCAGATGAACTTCATAAAGATTCAAAGTTTTGGGCATTAATATTTGTTTCCCTTAGTGTGGCTGGCTTCATATTTCACCCGATAAGGTCTTACTCCTTTGCGGTAGCAGGTTCTGAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAGGATGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTCTCGACTGATGTGGCTTCTATTCGAACTTTGGTTGGGGATGCTCTAGGTTTGCTGGTTCAAGAAATTTCTATCGTAGTTACAGCATTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCACTCATTGTTGTTGTTTTAGTACCTCTTGTGCTACTAAATGGATGTGTTCAAATGAAGTCAATGCAAGGATTCCGCACTGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAATGACGCAGTAGGGAATATCAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTGTAGGACCTATCCAGACAAGTATAAGGCAAGGTTTAGTCAGCGGAACAGGTTTCGTTTTATCACTCTTTTTTATGTTTTCGGTTTATGCGTACAGTTTTTATGCTGCAGCAAGACTAGTTCAGAATGGCAAAGCCTCATTCTCCCAGGTTTTCCGTGTATTTTATGCTCTCATGATGGCAGCTATAGCAATGTCACATTCTAGCTTCATGACCCCAGCAGCAAGTAAAGCAAAAAGTTCTGTTGCTTCTGTATTTGCTATCCTTGATCAGAAACCAAGAGTAGACCCTAGTGAAGAGTCCGTAATGACATTGGAAGAAGTGAAGGGAGAGATTGAGTAG 1359 0.415 MESFPYCTYAELTIDPNGAFTQLIRLQEIKRESEQHDANDSGQPENSIDSEQQLSQQLSLPQSLSHQSSGRENNSQHSFKTSNAMPITLDRFQTSEEWPKVLPSAALHKPREVSFVRIAYLNKPEIPVLLMGTLAAAATGAILPTMGLLLSHWIKTFFEPADELHKDSKFWALIFVSLSVAGFIFHPIRSYSFAVAGSELIKRIRLMCFEKIIHMEIGWFDKDENSSGALGARLSTDVASIRTLVGDALGLLVQEISIVVTALAIAFEANWQLSLIVVVLVPLVLLNGCVQMKSMQGFRTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTSIRQGLVSGTGFVLSLFFMFSVYAYSFYAAARLVQNGKASFSQVFRVFYALMMAAIAMSHSSFMTPAASKAKSSVASVFAILDQKPRVDPSEESVMTLEEVKGEIE* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00405 452 Gene3D ABC transporter type 1, transmembrane domain 92 439 IPR036640 GO:0005524|GO:0016020
Lapu3g00405 452 MobiDBLite consensus disorder prediction 40 80 - -
Lapu3g00405 452 CDD ABC_6TM_Pgp_ABCB1_D2_like 119 434 - -
Lapu3g00405 452 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 130 416 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00405 452 FunFam Uncharacterized protein 415 441 - -
Lapu3g00405 452 SUPERFAMILY ABC transporter transmembrane region 117 435 IPR036640 GO:0005524|GO:0016020
Lapu3g00405 452 MobiDBLite consensus disorder prediction 32 80 - -
Lapu3g00405 452 Pfam ABC transporter transmembrane region 129 401 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00405 452 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 87 436 IPR039421 -
Lapu3g00405 452 FunFam ABC transporter B family member 1 109 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00405 Lapu-Chr3 4114291 4116884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00405 17 452 Calmodulin-binding Proteins AT2G36910 27.438 3.79e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00405 K05658 - gmx:100777713 644.039