Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00404 ATGGTGGCTGAAGCTAGCTTGGATGCACACAATACTTCAACAGAGATGACAGGATCAACAACTGATCATCCACCAGTTCAAGGTCCTGAAAATACCCAAGAAATGGATGACAGGCAGCAGGATTCCAACAAGAGCAAGGTGAAGCATGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTATTGGGATTGTCTTCTGATGCTTGTCGGGGCAATAAGTGCTCTTGCTAATGGAATCGTTATGCCTTTAATGACTATACTCATTGGAGATGCCATTGATGCTTTCGGAGGAAATGCTGATAATAAACAAGCAGTAGTTCATTCAGTTTCCAGGGCATCTATGAAGTTTGCAGCCATAGGCGCAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAAAGACAAGCTGCAAGAATAAGGGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAACAGTGTAGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGAGGCCATGGGAGAGAAGGTAGGAAAATTCATCCAGTATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTCAGCCTTGTGCTTCTATCTTCTATTCCTCTTCTTGTCCTCTCTGGTTCCGTAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGCAGCTTATTCTGAAGCAGCAATTGTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTTGCATCATTTACTGGCGAGAAGCAAGCTATAGCTCAATACAAGCAATACTTGACAAAAGCTTACAAAGTTGGAGTGCAAGAGGGTTTGGCTGGTGGGTTTGGCTTTGGTTTTGTTCGTTTATTTATTTACTGTACCTACGGTTTGACAGTTTGGTTTGGAGGGAAGATGGTTATTGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACTGGTTCCATGTCTCTGGGGCAAGCATCTCCAAGCTTAACTGCATTTTCTGCAGGACAAGCAGCTGCCTTTAAAATGTTTGAAACAATACAGAGGCAGCCAGATATTGATGCTTATGACCCTTCTGGTCAACAGCTAGATGACATATCTGGAGAGATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCCAGACCTGATGAATACATATTCAATGGATTTTCAATTTCAATATCAAGTGGCACTACTACAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAAGAACCAGCTCTCTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAGGAATGGGCAACTGATGAAGAAATAAGAGCAGCAGCTGAACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGAGAGCATGGAACTCAGCTCTCTGGAGGCCAAAAGCAGAGAATATGTATAGCAAGAGCACTTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGCGGAATCAGAGAGAGTGGTACAAGAGACACTAGACAGAATTATGATCAACAGAACAACTGTCATTGTTGCCCACCGCCTAAGCACAATAAGGAATGCTGATGTCATTGCAGTTATTCATCAAGGAAAAGTTATAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCGCGATGGAGCTTTTAGCCATCTCGTTAGATTGCAAGAAATTAAAAAGGAGTCAGAACAGCATGATGCAAATTACTTAAGCAGGCCAGAAAGCTTCGTAGATTCTGAACGACAACCGAGCCATCGGTTTTCTTTCCCTGAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAACAACAGTCAGCACTCATTCAGAATATCAAATGCTACGCCCACCACACAAGATCTCTTCGAAACATCAGAAGGAGGGTCTGGAGCTTTTCCTTCAGCAGCATCACATAAACCTCAAGAAACTTCATTTCTCCGTATTGCTTATCTTAACAAGCCTGAAATCCCATTCTTACTTGTCGGGACTCTAGCAGCAGCAGTAACGGGAGCAATACTACCCACTGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTTTGAGCCCGCAGATGAACTCCGGAAAGACTCCAAATTTTGGGCACTAATATTTGTTGCTCTTAGTGTGGGTGCCTTCGTATTTGTTCCATTAAGATCCTACTTTTTTTCTGTAGCTGGTTCTAAGTTAATAGAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGATGCGGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTTCTACAGTAGTTACAGCCTTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATAGTTCTTGGTTTGGTACCTCTAATAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTGCAGCTTTCTGTGCTGAAGAGAAGGTGATGAAATTATACCAGAAAAAATGCGCAGGACCAATCAAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACGGGTTTTGGGTTATCGCTGTTCTTTCTGTTCTCTGTTTATGCATGCAGCTTTTATGCTGGGGCCAAACTTGTCGAGAATGACAAAACATCAATCTCAGACGTTTTCCGTGTATTTTTTGCTCTCTCGATGGCAGCTGTAGCAATGTCACAATCTGGCTTCATGACCCCAGCTGCAAGTAAAGCAAAAAGTTCGGCTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAGAATAGATACCAGTGATGAGTCAGGAATGACATTGCAACTAGTGAAGGGAGAGATCGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTCATGTTCCTGTATTCAAAGATCTTTCTTTGACCATCCACGCAGGAGCGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTACAAAGATTTTATGACCCAGATTCGGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTAAAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTGGGAGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCGATTGCGAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTGGATAGAACCACAATTGTGGTTGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGCCATTGCAGAGAAAGGAAAGCACGACACCTTGGTTAACAAAGGTGGTGCATATGATTCCTTGGTAGCACTGCATCTTAATGCTGCTTCATCATAG 3909 0.4259 MVAEASLDAHNTSTEMTGSTTDHPPVQGPENTQEMDDRQQDSNKSKVKHESNKTVPFYKLFSFADYWDCLLMLVGAISALANGIVMPLMTILIGDAIDAFGGNADNKQAVVHSVSRASMKFAAIGAGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSVEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFIKGWLLSLVLLSSIPLLVLSGSVMSFAFAKMASRGQAAYSEAAIVVERTIGSIRTVASFTGEKQAIAQYKQYLTKAYKVGVQEGLAGGFGFGFVRLFIYCTYGLTVWFGGKMVIEKGYTGGQVISVFFAVLTGSMSLGQASPSLTAFSAGQAAAFKMFETIQRQPDIDAYDPSGQQLDDISGEIELREVCFSYPSRPDEYIFNGFSISISSGTTTALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPALFTCSIKENIAYGKEWATDEEIRAAAELANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRICIARALLKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGKVIEKGTHAELTKDRDGAFSHLVRLQEIKKESEQHDANYLSRPESFVDSERQPSHRFSFPESLSRGSSGRGNNSQHSFRISNATPTTQDLFETSEGGSGAFPSAASHKPQETSFLRIAYLNKPEIPFLLVGTLAAAVTGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVALSVGAFVFVPLRSYFFSVAGSKLIERIRLMCFEKIIHMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDISTVVTALAIAFEANWQLSLIVLGLVPLIVLNGHLQMKSMQGFSTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMKLYQKKCAGPIKTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGAKLVENDKTSISDVFRVFFALSMAAVAMSQSGFMTPAASKAKSSAASVFAILDQKSRIDTSDESGMTLQLVKGEIEFHHVTFKYPTRPHVPVFKDLSLTIHAGATVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLKLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGAIAEKGKHDTLVNKGGAYDSLVALHLNAASS* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00404 1302 MobiDBLite consensus disorder prediction 664 702 - -
Lapu3g00404 1302 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Lapu3g00404 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 634 IPR027417 -
Lapu3g00404 1302 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 369 - -
Lapu3g00404 1302 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00404 1302 FunFam ABC transporter B family member 1 1048 1297 - -
Lapu3g00404 1302 MobiDBLite consensus disorder prediction 641 713 - -
Lapu3g00404 1302 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00404 1302 Pfam ABC transporter transmembrane region 736 1007 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00404 1302 CDD ABC_MTABC3_MDL1_MDL2 1058 1293 - -
Lapu3g00404 1302 Gene3D - 394 647 IPR027417 -
Lapu3g00404 1302 MobiDBLite consensus disorder prediction 7 28 - -
Lapu3g00404 1302 MobiDBLite consensus disorder prediction 1 48 - -
Lapu3g00404 1302 Gene3D ABC transporter type 1, transmembrane domain 1020 1047 IPR036640 GO:0005524|GO:0016020
Lapu3g00404 1302 FunFam ABC transporter B family member 1 716 1021 - -
Lapu3g00404 1302 CDD ABC_6TM_Pgp_ABCB1_D2_like 726 1041 - -
Lapu3g00404 1302 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1058 1295 IPR003439 GO:0005524
Lapu3g00404 1302 FunFam ABC transporter B family member 9 59 392 - -
Lapu3g00404 1302 Pfam ABC transporter 1077 1226 IPR003439 GO:0005524
Lapu3g00404 1302 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Lapu3g00404 1302 FunFam Uncharacterized protein 1022 1048 - -
Lapu3g00404 1302 Gene3D - 1048 1297 IPR027417 -
Lapu3g00404 1302 SUPERFAMILY ABC transporter transmembrane region 725 1038 IPR036640 GO:0005524|GO:0016020
Lapu3g00404 1302 SUPERFAMILY ABC transporter transmembrane region 59 380 IPR036640 GO:0005524|GO:0016020
Lapu3g00404 1302 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Lapu3g00404 1302 SMART AAA_5 423 595 IPR003593 GO:0016887
Lapu3g00404 1302 SMART AAA_5 1085 1278 IPR003593 GO:0016887
Lapu3g00404 1302 PANTHER ABC TRANSPORTER B FAMILY 33 637 IPR039421 -
Lapu3g00404 1302 MobiDBLite consensus disorder prediction 34 48 - -
Lapu3g00404 1302 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Lapu3g00404 1302 ProSitePatterns ABC transporters family signature. 1198 1212 IPR017871 GO:0005524|GO:0016887
Lapu3g00404 1302 Gene3D ABC transporter type 1, transmembrane domain 120 1014 IPR036640 GO:0005524|GO:0016020
Lapu3g00404 1302 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1023 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00404 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1047 1295 IPR027417 -
Lapu3g00404 1302 FunFam ABC transporter B family member 1 386 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00404 Lapu-Chr3 4105407 4111947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00404 53 1296 Calmodulin-binding Proteins AT2G36910 43.586 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00404 K05658 - gmx:100777713 2143.24