LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00403	ATGGCAGAGGATATTGAGTTGAATGGAGATCCTGAAAGCAAGCAAGACACAAAGAAGAGCAAGGCCAAAGATGAACCCGCCAAAACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATAATTTATTGATGTTTTGGGGGACTGTTGGTGCTATCGGGAATGGAATCTCCTTGCCCTTGATGACTCTGATATTCGGAAATATGATCAATGCATTTGGAGGTGCCAATAACTCCAAAGAAGTTGTTGATGAGGTTTCCAAGGTGTCTCTGAAATTTGTGTACTTGGCTGTCGGCACCTTTGTTGCGTCACTTTTGCAGTTGACTTGTTGGATGATCACTGGGGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACTATTTTGAGGCAAGATGTCACCTTCTTTGATAAGGAAACTAGAACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCTATGGGTGAGAAGGTAGGACAGTTCTTGCAGTTCGTGGCAACTTTCATTGGAGGTTTTGTAGTAGCATTCAGCAGGGGATGGCTTCTAGCTGTTGTCATGTTATCTAGTATTCCACCTCTTGCTTTCTGTGGTGCTATGGTAGGCCTGGTTATTTCAAAAGCATCATCCAGGGGACAAGAAGCTTATTCTATAGCTGCAAGTGTGGTGGAGCAGACAATTGGTTCAATAAGAACTGTTGCTTCATTCACTGGGGAGAAGCAAGCTATAGCTAATTATAATCGGTCCTTAATCAAAGCTTACAAGGCTGGAGTGCAAGCAGCACTAGCTTCTGGTTTTGGGTTTGGTTCTCTATACTTTGTTTTTACCTGCAGTTATGGTTTGGCTATATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACAGGAGGACAGGTTGTGACAGTAATGATGGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTGAGCGCTTTTGCTGCTGGAAAAGCTGCTGCCTTTAAGATGTTTGAAACAATTAAGAGGAAGCCAGAAATTGATGCTTATGACACTACGGGTCAGCGGCTTGATGACATTCGTGGAGATATAGAGCTTAGGGAGGTTTTCTTTAGTTATCCTACAAGACCAGATGAACTGATCTTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACGACAGCTTTGGTAGGGGAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACTGTCAGGTGAAGTTCTCATTGACAGTATCAACCTCAAAGAATTTCAACTGAAGTGGATCAGAGAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGCAGTATTAAAGAAAATATTGCCTATGGCAAGGATGGTGCAACTGATGAGGAAATCAGAGCTGCAGCGGAAGTAGCCAATGCTTCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAGCATGGAACTCAACTATCTGGTGGTCAAAAGCAAAGAGTTGCAATAGCAAGGGCAATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACTAGTGCTCTTGATGCTGAATCTGAGAAAATTGTGCAGGAGGCATTGGACCGAATAATGATAGACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGAAATGCTGATAGCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTTACCAAGGATCCTAATGGAGCCTACAGCCAGCTCATTAGACTGCAAGAAATTAAAGGATCAGAAAAAAATGCTGAAAGTGACAGAGACAAGCTAGAAAGTATAGTGCATTCTGGAAGACAATCAAGTCAGAGATCTTTCATAAGATCTATAAGCCAAAGGTCATCAGGAGTTGGAAGCAGTGGCCATAACTCATTCTCAGCATCGCATGGTGTGCCAGTGTCAGTTGGCTTCTTGGAACCAGCAAGTGGAGAACCTCAAACGCCTTCAACTTCACCACCGGAAGTGCCACTCTATCGCCTGGCATATTTAAACAAGCCAGAGATTCCAGTCTTACTGGCAGGGACTGTTGCTGCAGTAGTAAATGGAGTTTTATTACCCATTATTGCACTCTTTATGTCCAAAATGATAAGTATTTTCTACGAGCCAGTTGATGAACTTCGTAAAGATTCAAAACTCTGGGCATTGCTATTTGTTGCACTTGGTCTGGTATCATTTACCATGCTTCCATGCAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGCTGATCAAAAGGATTCGGAATATGTGTTTTGAGAAAGTAGTTCACATGGAAGTTAGCTGGTTCGATAAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCCGCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACAGCTGTCGGCAGTTTGGTAATTGCTTTTGATGCAAGCTGGCAGCTTGCTTTTATAGTGCTTGCTTTGGCACCGCTATTAGGACTAAATGGATACGTGCAATTTAGGTTCATGAAAGGATTCAGCTTAGATGCAAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAAAGAAGGTTATGGTATTGTACCAGGAAAAATGTGAAGGACCGATTAAGACAGGTATAAAGCGAGGGATAATAAGTGGAATTAGTTACGGGGTATCATTCTTCATGCTTTATGCAGTTTATGCATGCAGTTTTTATGCCGGAGCTCGACTTGTAGAAGATGGAAAATCAACATTCTCAGATGTTTTCCGTGTCTTTTTTGCATTCAGCATGGCAGCTCTGGGAATCTCTCAATCTGGCTCTTTGGTACCTGATTCAACTAACTCAAAAAGTGCTGCTGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACCCAAGTGATGACTCTGGATTAACGTTGGAAGAAGTGAAGGGGGAGCTTGAATTTAACAATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACAATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTGCAGAGGTTTTATGATCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATCCAAAGAATGCAAGTTAAATGGCTAAGACAACAGATGGGCCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATTCGTGCAAATATTGCATATGGCAAAGGCGGGGATGCAACAGAGGCAGAAGTTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACTAGCAGTTTGCAGGAGGGTTATGACACAATAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATAGCGCGAGCAATAGTAAAGAATCCAAAAATATTGCTACTAGATGAAGCCACAAGTGCACTTGATGCGGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGAACAGAACCACAGTAGTGGTGGCTCATAGGCTATCCACTATAAAGGGTGCAGATTTAATTGCAGTAGTTAAAAATGGTGTGATAGCAGAGAAGGGAAAACATGAAGCATTACTCAGCAAGAAAGGTTCACATGCTGAGCTCACCACTGATCCTAGTGGAGTTTATAGCCAGCTCGTTAGACTGCAGGAAATTAAAGGGTCAGAACATAATGCTTCAAATGACACAGACAAGATAGAAAGTATAGCACATTCTGGCAGACAATTAAGTCAAACATCTTTCTCACGATCTATAAGCCAAAGGTCACCAGGAGTTGGAAGCAGTGGTTGCAACTCTTTCTCAGAGTCACACGTTGTGCCCTCAACGGTTGGCTTGGAACCTGCAGGCAGGGGATCTCAAACACCTCCTGCAAAAGTTTCTTCCCCACCCGAAGTGCCACTCTATCGCCTGGCATATTTAAACAAGTCCGAGATTCCAGTCTTGTTGATAGGGACCCTAGCTGCAGTAGTAAGTGGATTATTATTACCCATTAGTGCACTCTTCGTTTCTAAAATGATAAGTATTTTCTATGAGCCAGTCGATGAACTTCGTAAAGATTCAAAGCTTTGGGCATTACTATTTGTTGCACTTGGTGTGGTATCATTTATCATGGCTCCATGTAGATTCTACCTTTTTGGAATTGCTGGTGGTAAGTTGATCAAAAGGATTCGGAAAATGTGTTTTGAGAAAGTTGTTCACATGGAAGTTAGCTGGTTCGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTGCAGCTCTTGGCAGTTTGGTAATTGCTTTTGAAGCAAGTTGGCAGCTTGCTTTTATAGTGCTTGCTTTGGCACCGCTATTAGGACTAAATGGATACGTGCAATTTAGGTTCATGAAAGGATTCAGCGCAGATGCAAAGAAACAGTACGAGGAAGCCAGTCAAGTGGCAAGTGATGCAGTAGGGAGTATAAGAACGGTTGCTTCTTTCTGTGCTGAAAAGAAGGTGATGGAATTATACCAGAAAAAATGTGAAGGACCAACTAAGACAGGTATAAGGCGTGGGATAATAAGTGGAATTGGTTATGGGGTATCATTCTTCCTGCTTTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGAAAATCAACATTCTCAGACGTTTTCCGTGTCCTTTTTGCACTCAGCTTGGCAGCAATGGGAATTTCTCAATCCAGCTCTTTGGTACCTGATTCCGCTAAATCAAAAAGTGCTGCCGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACCCAAGTGATGACTCTGGATTCACATTGGAAGAAGTCAACGGAGAGATTGAATTTAACAATGTCAGTTTCAGGTATCCTACCAGACCTGATGTTCAAGTATTCAGAGATCTTTGCTTGACTATTCATAGTGGCAAGACAGTTGCACTGGTGGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTGCAGAGGTTTTATGATCCAGACTCAGGTCACATCACACTGGATGGAAAAGAAATCCAAAGGATGCAAGTTAAATGGCTAAGACAGCAGATGGGCCTGGTGAGCCAGGAGCCTGTGTTGTTTAATGACACTATTCGTGCAAATATTGCATATGGCAAAGGCGGGGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACTAGCAGTTTGCAGGAGGGTTATGAAACAATAGTTGGGGAGAGAGGTATTCAGCTATCTGGAGGGCAAAAGCAGCGAGTGGCAATTGCACGAGCTACAGTGAAGAATCCAAAAATATTGCTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAATGGTTCAGGATGCACTAGACCGTGTTATGGTGAACAGAACCACAATAGTGGTGGCTCATAGGCTATCCACCATAAAGGGTGCGGATTTAATTGCAGTGGTTAACAATGGTGTGATAGCAGAGAAGGGAAAACATGAAGCATTACTCAACAAAGGAGGTGACTATGCTGCCTTAGTAGCATTGCACACAACTGCTCCTACATCCTAG	5820	0.427	MAEDIELNGDPESKQDTKKSKAKDEPAKTVPLYKLFSFADPLDNLLMFWGTVGAIGNGISLPLMTLIFGNMINAFGGANNSKEVVDEVSKVSLKFVYLAVGTFVASLLQLTCWMITGERQAARIRGLYLQTILRQDVTFFDKETRTGEVVGRMSGDTVLIQDAMGEKVGQFLQFVATFIGGFVVAFSRGWLLAVVMLSSIPPLAFCGAMVGLVISKASSRGQEAYSIAASVVEQTIGSIRTVASFTGEKQAIANYNRSLIKAYKAGVQAALASGFGFGSLYFVFTCSYGLAIWFGAKMIIEKGYTGGQVVTVMMAVLTGSMSLGQASPSLSAFAAGKAAAFKMFETIKRKPEIDAYDTTGQRLDDIRGDIELREVFFSYPTRPDELIFNGFSLSIPSGTTTALVGESGSGKSTVVSLIERFYDPLSGEVLIDSINLKEFQLKWIREKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAEVANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKIVQEALDRIMIDRTTVIVAHRLSTIRNADSIAVIHQGKIVERGSHAELTKDPNGAYSQLIRLQEIKGSEKNAESDRDKLESIVHSGRQSSQRSFIRSISQRSSGVGSSGHNSFSASHGVPVSVGFLEPASGEPQTPSTSPPEVPLYRLAYLNKPEIPVLLAGTVAAVVNGVLLPIIALFMSKMISIFYEPVDELRKDSKLWALLFVALGLVSFTMLPCRFYLFGVAGGKLIKRIRNMCFEKVVHMEVSWFDKAEHSSGAIGARLSADAAAVRALVGDALGLLVQNIATAVGSLVIAFDASWQLAFIVLALAPLLGLNGYVQFRFMKGFSLDAKKLYEEASQVANDAVGSIRTVASFCAEKKVMVLYQEKCEGPIKTGIKRGIISGISYGVSFFMLYAVYACSFYAGARLVEDGKSTFSDVFRVFFAFSMAALGISQSGSLVPDSTNSKSAAASVFAILDRKSQIDPSDDSGLTLEEVKGELEFNNVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEVIAAAELANAHNFTSSLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVNRTTVVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLSKKGSHAELTTDPSGVYSQLVRLQEIKGSEHNASNDTDKIESIAHSGRQLSQTSFSRSISQRSPGVGSSGCNSFSESHVVPSTVGLEPAGRGSQTPPAKVSSPPEVPLYRLAYLNKSEIPVLLIGTLAAVVSGLLLPISALFVSKMISIFYEPVDELRKDSKLWALLFVALGVVSFIMAPCRFYLFGIAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAASVRALVGDALGLLVQNIAAALGSLVIAFEASWQLAFIVLALAPLLGLNGYVQFRFMKGFSADAKKQYEEASQVASDAVGSIRTVASFCAEKKVMELYQKKCEGPTKTGIRRGIISGIGYGVSFFLLYAVYACSFYAGARLVEDGKSTFSDVFRVLFALSLAAMGISQSSSLVPDSAKSKSAAASVFAILDRKSQIDPSDDSGFTLEEVNGEIEFNNVSFRYPTRPDVQVFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFTSSLQEGYETIVGERGIQLSGGQKQRVAIARATVKNPKILLLDEATSALDAESEKMVQDALDRVMVNRTTIVVAHRLSTIKGADLIAVVNNGVIAEKGKHEALLNKGGDYAALVALHTTAPTS*	1940

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu3g00403	1939	Gene3D	-	368	621	IPR027417	-
Lapu3g00403	1939	ProSitePatterns	ABC transporters family signature.	1835	1849	IPR017871	GO:0005524\|GO:0016887
Lapu3g00403	1939	MobiDBLite	consensus disorder prediction	612	628	-	-
Lapu3g00403	1939	SUPERFAMILY	ABC transporter transmembrane region	1361	1679	IPR036640	GO:0005524\|GO:0016020
Lapu3g00403	1939	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1695	1932	IPR003439	GO:0005524
Lapu3g00403	1939	CDD	ABC_6TM_Pgp_ABCB1_D2_like	694	1009	-	-
Lapu3g00403	1939	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	48	335	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lapu3g00403	1939	FunFam	ABC transporter B family member 9	1662	1684	-	-
Lapu3g00403	1939	ProSitePatterns	ABC transporters family signature.	1166	1180	IPR017871	GO:0005524\|GO:0016887
Lapu3g00403	1939	FunFam	ABC transporter B family member 9	34	366	-	-
Lapu3g00403	1939	FunFam	ABC transporter B family member 9	993	1015	-	-
Lapu3g00403	1939	FunFam	ABC transporter B family member 1	1016	1276	-	-
Lapu3g00403	1939	FunFam	ABC transporter B family member 1	1685	1934	-	-
Lapu3g00403	1939	FunFam	ABC transporter B family member 1	360	609	-	-
Lapu3g00403	1939	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	362	608	IPR027417	-
Lapu3g00403	1939	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1374	1660	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lapu3g00403	1939	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1015	1261	IPR027417	-
Lapu3g00403	1939	Gene3D	ABC transporter type 1, transmembrane domain	1342	1683	IPR036640	GO:0005524\|GO:0016020
Lapu3g00403	1939	SMART	AAA_5	397	583	IPR003593	GO:0016887
Lapu3g00403	1939	SMART	AAA_5	1053	1246	IPR003593	GO:0016887
Lapu3g00403	1939	SMART	AAA_5	1722	1915	IPR003593	GO:0016887
Lapu3g00403	1939	MobiDBLite	consensus disorder prediction	7	23	-	-
Lapu3g00403	1939	FunFam	ABC transporter B family member 1	684	992	-	-
Lapu3g00403	1939	Pfam	ABC transporter transmembrane region	48	321	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lapu3g00403	1939	Pfam	ABC transporter transmembrane region	1373	1643	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lapu3g00403	1939	Pfam	ABC transporter transmembrane region	705	976	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lapu3g00403	1939	Gene3D	ABC transporter type 1, transmembrane domain	93	1000	IPR036640	GO:0005524\|GO:0016020
Lapu3g00403	1939	PANTHER	ABC TRANSPORTER B FAMILY	10	611	IPR039421	-
Lapu3g00403	1939	MobiDBLite	consensus disorder prediction	1	23	-	-
Lapu3g00403	1939	Pfam	ABC transporter	1715	1863	IPR003439	GO:0005524
Lapu3g00403	1939	MobiDBLite	consensus disorder prediction	612	640	-	-
Lapu3g00403	1939	CDD	ABC_MTABC3_MDL1_MDL2	1695	1930	-	-
Lapu3g00403	1939	Pfam	ABC transporter	1046	1194	IPR003439	GO:0005524
Lapu3g00403	1939	FunFam	ABC transporter B family member 1	1353	1661	-	-
Lapu3g00403	1939	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1684	1931	IPR027417	-
Lapu3g00403	1939	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	370	606	IPR003439	GO:0005524
Lapu3g00403	1939	Pfam	ABC transporter	389	537	IPR003439	GO:0005524
Lapu3g00403	1939	SUPERFAMILY	ABC transporter transmembrane region	28	354	IPR036640	GO:0005524\|GO:0016020
Lapu3g00403	1939	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1026	1263	IPR003439	GO:0005524
Lapu3g00403	1939	CDD	ABC_MTABC3_MDL1_MDL2	370	608	-	-
Lapu3g00403	1939	ProSitePatterns	ABC transporters family signature.	509	523	IPR017871	GO:0005524\|GO:0016887
Lapu3g00403	1939	CDD	ABC_6TM_Pgp_ABCB1_D1_like	47	331	-	-
Lapu3g00403	1939	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	705	991	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lapu3g00403	1939	CDD	ABC_MTABC3_MDL1_MDL2	1027	1262	-	-
Lapu3g00403	1939	Gene3D	-	1016	1266	IPR027417	-
Lapu3g00403	1939	Gene3D	-	1685	1937	IPR027417	-
Lapu3g00403	1939	MobiDBLite	consensus disorder prediction	1299	1324	-	-
Lapu3g00403	1939	SUPERFAMILY	ABC transporter transmembrane region	692	1010	IPR036640	GO:0005524\|GO:0016020
Lapu3g00403	1939	CDD	ABC_6TM_Pgp_ABCB1_D2_like	1363	1678	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g00403	Lapu-Chr3	4070894	4099816	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g00403	1375	1936	Calmodulin-binding Proteins	AT2G36910	39.153	4.06e-124	423

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00403	K05658		-	gmx:100799760	2089.31