Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00389 ATGGGTTGCTTTGGCTTCTGCAAAGGAGATGACAGTGTCGCAATTGCTGACAGAGGACCTTTCATGCAAAGCACTCCTACTGGGAACGCCAGTTATCATGGCAGACATACAGCAGTAACTGCTCCTCGACCTATAAATTTTCAACCTATTGCTGTCCCTCCTATTACAGTAGACGAATTGAAGTCTTTAACTGATAATTTTGGCACAAAATCTTTCATTGGTGAGGGTGCATATGGGAAAGTATTTCAAGCTACATTGAAAACTGGGCGTGCAGTGGTAATCAAAAAGCTAGATTCCAGTAATCAGCCAGAGCAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAATGTTGTTGAGCTTGTTAACTATTGCGTTGATGGTCCTTTCCGTGCCCTTTCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTACATGGACGAAAAGGTATCAAGGGTGCACAACCTGGTGCAGTACTCTCTTGGGCTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGGGGACTTGAATATCTTCATGAAAAGGCAGAGGTTCACATCATCCATCGTTACATTAAGTCTAGCAACATACTTCTTTTTGACGATGATGTTGCAAAGATTGCTGACTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGTCTTCATTCTACCCGTGTTCTTGGGACCTTTGGTTATCATGCTCCAGAATATGCAATGACGGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTATACTCCTGGAACTCTTAACCGGGCGTAAGCCGGTTGATCATACACTGCCCCGAGGACAGCAAAGCCTTGTCACCTGGGCAACACCAAAGCTTAGTGAAGATAAGGTAAAGCTGTGTGTTGATGTTAGACTAAAGGGAGAGTATCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTACAATATGAAGCTGAGTTTCGGCCAAACATGAGCATTATAGTGAAAGCTTTACAGCCTCTACTGAATACTCGTCCTACTCAATCAAAGGGATCACCAAACATGTAA 1083 0.4331 MGCFGFCKGDDSVAIADRGPFMQSTPTGNASYHGRHTAVTAPRPINFQPIAVPPITVDELKSLTDNFGTKSFIGEGAYGKVFQATLKTGRAVVIKKLDSSNQPEQEFLSQVSIVSRLKHENVVELVNYCVDGPFRALSYEYAPKGSLHDILHGRKGIKGAQPGAVLSWAQRVKIAVGAARGLEYLHEKAEVHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKLCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRPTQSKGSPNM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00389 360 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
Lapu3g00389 360 CDD STKc_IRAK 73 346 - -
Lapu3g00389 360 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Lapu3g00389 360 PIRSF ILK 23 356 - -
Lapu3g00389 360 Pfam Protein tyrosine and serine/threonine kinase 71 343 IPR001245 GO:0004672|GO:0006468
Lapu3g00389 360 FunFam pto-interacting protein 1 143 354 - -
Lapu3g00389 360 SUPERFAMILY Protein kinase-like (PK-like) 45 343 IPR011009 -
Lapu3g00389 360 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00389 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 35 352 - -
Lapu3g00389 360 Gene3D Phosphorylase Kinase; domain 1 33 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00389 Lapu-Chr3 3979639 3984778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00389 55 359 Receptor kinase-like Gene Family AT4G02010 47.649 7.69e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lapu3g00389 PK_Tyr_Ser-Thr 7.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00389 K13436 - gmx:547596 676.781