Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00388 ATGGAGGCTCAGTTTGGGGGTAAGAATCAGTACTTGTATAGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAGCGACTCAATTCAGTGCCATCAGATTGTAGGAGTCCCCAGTTTTTCCCACCACATCCTGAAATTCCTGCAAAAAAGGCCAATCCTTCTAACAATTTGTCTTCTTCTGTAATCAACCCAGGTGAGGGTAAGAGGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGGGAAGGTGAAAGGGAGGGGCTGAATGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCGCGGTTACCCTTTCATTGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTGCTGCTGCTGCTACCACCTCAAACCGTGCTATTTGTCAGGTGCAAGATTGTACGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGCGATGTTCATTCTAAGGCCACTATGGCACTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGATTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCTGGCCATAACAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGTTATTAATGAAGGCTCTCTTAACGATGGAAGGGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTACATACAAATGGCTCAGATCATACAAGGAATCAGGATATACTCTCCCATCTTCTAAGGAACTTGGCAAGTCTGGCAGCTCCAAATAATGGTAGAATTTTAGCCTCCTTATTGGAGGACTCTAAAGGTTTGTTAAATGCTGGGATAGCTGGAGCTGCTCATGATAAACCCAACCTTAATTCAAACACTCCTGAAGCTTCCAGGCCTTCTGGTTCTTCCATTAAGATTGATAATGGCTTCATCAGTCAGGACCCTCCAATATCTATGGCACAGTGTGAAACAGGGCCAACTAATGGTGGGACGCAAAAATGTATACCTTCAGGTCATGGTGGAGTAGAAAACTGGAAACAACCTTCAGGAGCACTATTCTCAAGTACAGTTCAATCCAGGGGAAGTCTTCCATCCCAATTAACTGCAGTGGAGACTACACTTAGAAGGAACAATTTAAATAACGTTGACCTGAATAATGTATACAGTGATATGCAGAACACTGGTGAGAATCATAAGAAGCCTTATCCTCATGTGGCATCAGAGATGGGATCTATTGATCTTCCCTCGTGGTTGCAATGTGATTCTCTCAAATCAAGTCCTCCACAGACAAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGTGTTTACAGAGTCGCACAGATCGTATTGTTTTTAAGCTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGTTCTCAGATTCTCAACTGGTTATCTCGCAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACTATATATGTTCGTCTTGAAAAATCTACATGGGAAGAGCTCTACTGTAATCTAGGATCCAGCTTGAGAAAGCTTATTGCCGCATCAAATGATACATTTTGGAGAACAGGATGGGTATTTGCAAGGGTGCAGCAATCTGTGGCTTTTCTGTGTAACGGTCAGGTAGTCGTAGATGTTCCCTTGTGTCTAAAAGGCTCGCATCATTGTATGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCCAGGGCTCACTTTATTGTGAAAGGTCGCAACCTTTCCCAGTCTAGCACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAAATGCTAGCTGTCATGATTTGATTGGTGGAGCTGATGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAAATGTATCTGGGAGGGGTTTTATTGAGGTGGAAGACCATGGTCTTGGTAGCTGTTCCTTTCCATTTATAGTTGCAGAGCAAGAAGTCTGTTCAGAGATCTGCAAGCTGGAGAACGTGATTGAGGCTGCTGAAACCACTGATGATATCCAGATTATAAACAAGCAAAGGGAAGAAAAGACTCAAGCTCTTCATTTCTTACAGGAAATGGGTTGGCTCATTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCGTGGCTCCTGTCCATGATCTCTTCCAATTTAATCGGTTCACGTGGCTTGTTGACTTCTCCATGGACCGTGGTTGGTGTGCTGTGATGAAAAAGCTCTTGGACATTATATTTGAGGGCGGTGTTGACGCAGGAGAGCATGCTTCCATCGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCTGTGAAGAGAAACAGTAGGCCTATGGTAGAACTACTGTTAAGATTTGTGCCTGTTAAAACCTCAGATGGTGCTGACAGTGAAGTGAAGCAAGTTGAAAAGGTCACTGACAGATTCTTATTTAGACCTGATACTGTGGGGCCAGCTGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAGTGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCCGGATTGGTAGGAATTGAAGTATGGAAAAGTGGCCGAGACAGTACAGGTTTGACCCCCAACGACTACGCATGCCTTAGGGGCTATTACTCTTACATTCAACTTGTCCAGAAGAAGACCAACAAAAAAGGCGAAAGACTACATGTGGTTGATATCCCTGGCACTGTTGTAGACAGTGGTAACACAAAGCAGAAACATAGGACAGGTAAAGTTTCAAGTTTACAGACTGAGAAGATGGAAACCACAGAAATGGCAAGCGAATGCAGGGTATGCCAGCAGAAGTTGGCTTATGGCGGCATGAGAACAGCAGTGGTTTATAGGCCAGTCTTGCTCTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCGAGAGTTTACTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGGACAATATAA 3114 0.4425 MEAQFGGKNQYLYRPVVSGMKKAVNGKRSLEWDLNDWKWDGDLFTAQRLNSVPSDCRSPQFFPPHPEIPAKKANPSNNLSSSVINPGEGKRELEKRRRGVIGEGEREGLNDEGGSLSLNLGGRGYPFIVEGEEKSGKKTKVIGTTAAAATTSNRAICQVQDCTADLSNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVINEGSLNDGRGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASLAAPNNGRILASLLEDSKGLLNAGIAGAAHDKPNLNSNTPEASRPSGSSIKIDNGFISQDPPISMAQCETGPTNGGTQKCIPSGHGGVENWKQPSGALFSSTVQSRGSLPSQLTAVETTLRRNNLNNVDLNNVYSDMQNTGENHKKPYPHVASEMGSIDLPSWLQCDSLKSSPPQTSRNSDSTSNQSPSSSSGEAQCLQSRTDRIVFKLFGKDPNDFPLLLRSQILNWLSRSPTEIESYIRPGCIILTIYVRLEKSTWEELYCNLGSSLRKLIAASNDTFWRTGWVFARVQQSVAFLCNGQVVVDVPLCLKGSHHCMISCIKPLAVPASARAHFIVKGRNLSQSSTRLLCALEGKYLVNASCHDLIGGADESIQHLNFSCHIPNVSGRGFIEVEDHGLGSCSFPFIVAEQEVCSEICKLENVIEAAETTDDIQIINKQREEKTQALHFLQEMGWLIHRSRVKVRLGPVAPVHDLFQFNRFTWLVDFSMDRGWCAVMKKLLDIIFEGGVDAGEHASIELALLDMSLLHKAVKRNSRPMVELLLRFVPVKTSDGADSEVKQVEKVTDRFLFRPDTVGPAGLTPLHVAASMSGSENVLDALTDDPGLVGIEVWKSGRDSTGLTPNDYACLRGYYSYIQLVQKKTNKKGERLHVVDIPGTVVDSGNTKQKHRTGKVSSLQTEKMETTEMASECRVCQQKLAYGGMRTAVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00388 1037 SUPERFAMILY Ankyrin repeat 786 925 IPR036770 -
Lapu3g00388 1037 MobiDBLite consensus disorder prediction 314 334 - -
Lapu3g00388 1037 MobiDBLite consensus disorder prediction 62 115 - -
Lapu3g00388 1037 FunFam Squamosa promoter-binding-like protein 14 148 218 - -
Lapu3g00388 1037 Pfam SBP domain 157 230 IPR004333 GO:0003677
Lapu3g00388 1037 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Lapu3g00388 1037 MobiDBLite consensus disorder prediction 455 483 - -
Lapu3g00388 1037 SUPERFAMILY SBT domain 155 236 IPR036893 GO:0003677|GO:0005634
Lapu3g00388 1037 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Lapu3g00388 1037 MobiDBLite consensus disorder prediction 88 110 - -
Lapu3g00388 1037 Gene3D - 704 938 IPR036770 -
Lapu3g00388 1037 SMART ANK_2a 807 836 IPR002110 GO:0005515
Lapu3g00388 1037 SMART ANK_2a 863 893 IPR002110 GO:0005515
Lapu3g00388 1037 SMART ANK_2a 903 932 IPR002110 GO:0005515
Lapu3g00388 1037 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 922 IPR044817 GO:0003677
Lapu3g00388 1037 MobiDBLite consensus disorder prediction 221 241 - -
Lapu3g00388 1037 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00388 Lapu-Chr3 3961259 3968373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00388 20 1036 SBP-box Gene Family AT3G60030 45.227 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu3g00388 SBP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00388 - - gsj:114419913 1628.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00388 3 3961259 3968373 Lapu3g00388 3 3961259 3968373 ECH
Lapu3g00388 3 3961259 3968373 Lapu9g00320 9 3224538 3236619 PCT