Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00381 ATGGCTGAGACCGCAAAATACATTCCCAACTCACAATTAGAGCTTCAAGAGATATTGCAAGAAGCAGTACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCGCAACTATGAGAAGTTTAAGTTAACACCAGATCCACCTGTTAGACCTCCAGCTGGATCACTATTCTTGTTCGATCGAAAAGCACTTCGTTATTTTCGCAGGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACCGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCCCACGGAGAGGATAATGAAAACTTCCAACGGAGAAGTTTTTGGATGCTTGACGAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGCTGCAATTCTGGCATCTCACATGTGCCTGTAGTTCTAGTAAACCTGGTAAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAAAATAAACACACCAATATCTGTAGTTCAAACATCTTTCACATCAAGTGCAAATAGAATTAGTCAGAATGGGCACTCTTCTGAGAATGAGGATGACAATTCAAAAGATGTTCCTCAAGCCTCCTCTCATGCTCATCCTATCAGCAATTCCATAATTCACAGTGCACCTTGGTTTACACATGAAGTTGCTGGGTTTTCTGAGTTGTTGAGGAATCCCTTGATTTCAACATGGTCATCTACTTTCCCTAGCTGTTTTCCTGGTACTGTCTTGTCTCCCTGGACCTTAATTCAGAATTCTAGCAGAAACGCAATTTATATGCATGATGAAAAACTTCACATTGAAGGATCTGTTGAAGGCTCAGAAGCTGACTTCACTGTTCATAAGCTAAACAATGCTAAGTTAGATGCTGTTAATAGAATGCAAGATGGTGTAATTTTCAGAGATAGGCTCGTCAGTGACATGTACATCCAACCAGTTGAACAAGATTTACTGACTGTTAATCAGGTTCAAAACGAGGACGGTCTAGATACATTCCGTGCTCAATTATATGATCATAATGATCATCCAATTGTTTCAACTACTAAAGGCCTAGTTGAACAGAAACTTAAAGATGGTGGTTCGGACAATGATGAATCAGTACAGTTTGAATATGGGGAAATGAAGAAACTGGATAGTTTTGGAAGGTGGATGGATAAGGAGATTTGTGGAGACTGTGACAATTCCTTGATGGCCTCGGACTCTGGTAATTATTGGAGTACACTTGATGCTCATAACAAGGATAAGGAGGTATCTTGTTTACGACACATACAGTTGGATATGGATTCATTGGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCATATACTGGAGTTACAACTAAGGTTTTAATAGTTGGCACATTTCTCGGGAGTAAAAAGCTCTCTAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATCGAAGTTTCTGCTGAAGTTTTAGCGGATAATGTGATACGGTGTCAGACTCCTTTGCACTCACCTGGTCGTATACCATTCTATGTTACGTGCAGTAATAGGTTAGCCTGCAGTGAGATCAGGGAATTTCAATTTGATGAACATCCAACCAAATTTTTAGGTCCTTTGGGTATTAAAATATCACCAGAAGTTGAGGTTCGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGACCTGACAAAAAGTGGTTGAAGTGCTCTGTTTCCGAATGTGAAAAATGTAAACTCCAGGGAATAATGTATTCCATGAGAGATGATAGGGGAGTATTTAAAGAAACTTTCCAAATTGATGGAATTGATCATATAAACCCTATAGATGTATTATTCCAGAGATTAATGAGGGACAAGCTTTATGATTGGTTGATATACAAGGTTCAAGAAGGAGGAAAAGGATCACAAGTGTTGGATGTTGAAGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCATTAGTTGCTGCTGGTATCAGTCCTAATTTCAGAGACAATCGTGGAAGAACAGGACTTCATTGGGCATCGTATTTTGGGAGAGAAGAAACTGTTAGTGTTCTAGTCAAATTAGGCGCAGCCCCAGGTGCGGTTGAGGATCCAACGTCAGCACATCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGACTCATCAATTATCTGTATTGACTCTCAAGGAAAATGAAACGGGTAACATTGCCACAACCGTAGCAGCTGACAGTGCTTTTCAGTCTGCTGAAGATGACTCGTCTAATTTGACAATGGATGAGCAACACTATCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCGCATGCAGCTAGTTCAATCCTAGCCGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAATCAGCTAAAAGTAGAAGTGATACTCCAGACTCCTTACTTGACACGGTTGCCGATTCTTTGAGCAAGGTACAGAAGATGGATTACTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAGATACCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGATAGGCAACCGCATTGTAAAAATCCAGGCTCATTTTAGAGGACACCAAGTTCGTAAGCAATACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCTATTCTTCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCAGGGAGGGCAGCCAGTTGGCCTTGATGAGTATGACTTTCTTAGCATTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTCGATAGAGTCAAGTCCATGGTTCGTAACCTAGAGGCAAGGGATCAGTATATGAGGCTCATCATGAAATATCAAACGTTTAAGATTGATGACAGCGGAAGCAGTCAATCACAGCATGTCGATTAG 2991 0.4122 MAETAKYIPNSQLELQEILQEAVHRWLRPVEICEILRNYEKFKLTPDPPVRPPAGSLFLFDRKALRYFRRDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSFWMLDEQLEHVVLVHYREIKEGCNSGISHVPVVLVNLVSSQNSSVLSSTKINTPISVVQTSFTSSANRISQNGHSSENEDDNSKDVPQASSHAHPISNSIIHSAPWFTHEVAGFSELLRNPLISTWSSTFPSCFPGTVLSPWTLIQNSSRNAIYMHDEKLHIEGSVEGSEADFTVHKLNNAKLDAVNRMQDGVIFRDRLVSDMYIQPVEQDLLTVNQVQNEDGLDTFRAQLYDHNDHPIVSTTKGLVEQKLKDGGSDNDESVQFEYGEMKKLDSFGRWMDKEICGDCDNSLMASDSGNYWSTLDAHNKDKEVSCLRHIQLDMDSLGPSLSQEQLFSIHDFSPDWAYTGVTTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLADNVIRCQTPLHSPGRIPFYVTCSNRLACSEIREFQFDEHPTKFLGPLGIKISPEVEVRLQIRLLKLVDLGPDKKWLKCSVSECEKCKLQGIMYSMRDDRGVFKETFQIDGIDHINPIDVLFQRLMRDKLYDWLIYKVQEGGKGSQVLDVEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNRGRTGLHWASYFGREETVSVLVKLGAAPGAVEDPTSAHPPGQTAADLASSRGHKGIAGYLAEADLTHQLSVLTLKENETGNIATTVAADSAFQSAEDDSSNLTMDEQHYLKESLAVFRKSAHAASSILAAFRARSFCQRQSAKSRSDTPDSLLDTVADSLSKVQKMDYFEDYLHFAALKIQKRYRGWKGRKDFLKIGNRIVKIQAHFRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFQGGQPVGLDEYDFLSIGRRQKSDDVKKALDRVKSMVRNLEARDQYMRLIMKYQTFKIDDSGSSQSQHVD* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00381 996 SUPERFAMILY E set domains 453 538 IPR014756 -
Lapu3g00381 996 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lapu3g00381 996 ProSiteProfiles IQ motif profile. 857 886 IPR000048 GO:0005515
Lapu3g00381 996 MobiDBLite consensus disorder prediction 183 208 - -
Lapu3g00381 996 Pfam IPT/TIG domain 453 531 IPR002909 -
Lapu3g00381 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 851 907 IPR027417 -
Lapu3g00381 996 Gene3D Immunoglobulins 446 544 IPR013783 -
Lapu3g00381 996 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 982 - -
Lapu3g00381 996 Pfam IQ calmodulin-binding motif 884 901 IPR000048 GO:0005515
Lapu3g00381 996 Pfam IQ calmodulin-binding motif 860 877 IPR000048 GO:0005515
Lapu3g00381 996 Gene3D - 855 904 - -
Lapu3g00381 996 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Lapu3g00381 996 FunFam Calmodulin-binding transcription activator 2 856 904 - -
Lapu3g00381 996 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lapu3g00381 996 SUPERFAMILY Ankyrin repeat 646 747 IPR036770 -
Lapu3g00381 996 ProSiteProfiles Ankyrin repeat region circular profile. 685 710 - -
Lapu3g00381 996 Gene3D - 623 781 IPR036770 -
Lapu3g00381 996 SMART iq_5 879 901 IPR000048 GO:0005515
Lapu3g00381 996 SMART iq_5 856 878 IPR000048 GO:0005515
Lapu3g00381 996 FunFam Calmodulin-binding transcription activator 2 446 543 - -
Lapu3g00381 996 ProSiteProfiles IQ motif profile. 882 908 IPR000048 GO:0005515
Lapu3g00381 996 Coils Coil 949 969 - -
Lapu3g00381 996 Pfam CG-1 domain 22 134 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00381 Lapu-Chr3 3897030 3905812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00381 385 992 CAMTA Transcription Factor Family AT5G64220 41.680 1.01e-151 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lapu3g00381 CG-1 1.7e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00381 K21596 - gmx:100818336 1675.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00381 3 3897030 3905812 Lapu3g00381 3 3897030 3905812 ECH