Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00372 ATGATCGTGAGCCCGAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGACCATTCCGATGTTGGACGTGAAGTATCATATTTGCGTGGCGCAAGAACACAACGTCGAGGTTGAGGTTTCGCCCAAATCCCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCTGTGAATCGCTCTGATATCAAACATTCCATTTTGGAGACCCCTGCAGTGAGTTTTGTCCCTAATGCGCGTTCTGGTAGCTATGCTGAGATTGGGCCGCGGGTTTCTATGGATGATGAGCACATTTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCTTTTTATGCGGTTTTTGATGGTCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGATTGTTTTTTGAAGATGCGGACATGCTGCAGACATATGATACTGATGCGTTTTTTCTAGAGAAGTTAGAGGATTCCCATAGGAGAGCTTTTCTACGGGCAGATCTTGCCTTGGCTGACGAACAAACTGTTAGTAGTTCATGTGGGACTACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCCGGAGAGGTGTGGCTGTTGAGATGTCTAACGATCACAGGCCAAGTTTTCTGCCGGAACAGCGGAGGGTTGAGGAGTTAGGTGGATACATTGATGATGGATACCTCAATGGGTATCTTTCAGTAACCCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTCGGTGCTGCTTCTCCTCTTATTGCTGAGCCAGATGTTCGACTGGCCACATTGACCGAGGAGGATGAGTTCTTGATCATTGGGTGTGACGGGATTTGGGATGTAATGTCTAGCCAAGTTGCTGTTAGCCTTGTTCGCCGAGGATTAAGGAGGCATAATGACCCACAGAAGTGTGCCATGGAACTAGTCAAGGAAGCGTTGCGCCTGCATACATCGGATAATCTCACTGTGATTGTTGTATGTTTGTCGCCCATTGAAAGCATTGTTGAATCATGCCCACCCCAAAGGCGAAGATTCAAAGCTTGCAGCCTGTCTGAAGATGCCCGTAATAGGTTGAAGAGCTTGATGATTGAGCGAAATTGA 1161 0.4755 MIVSPKMVAEAEIICQQTIPMLDVKYHICVAQEHNVEVEVSPKSPSPSVPIFGQAVNRSDIKHSILETPAVSFVPNARSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDADMLQTYDTDAFFLEKLEDSHRRAFLRADLALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSFLPEQRRVEELGGYIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLATLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQKCAMELVKEALRLHTSDNLTVIVVCLSPIESIVESCPPQRRRFKACSLSEDARNRLKSLMIERN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00372 386 SMART PP2C_SIG_2 93 348 IPR001932 -
Lapu3g00372 386 CDD PP2Cc 78 348 IPR001932 -
Lapu3g00372 386 Pfam Protein phosphatase 2C 88 340 IPR001932 -
Lapu3g00372 386 ProSiteProfiles PPM-type phosphatase domain profile. 78 348 IPR001932 -
Lapu3g00372 386 SUPERFAMILY PP2C-like 72 350 IPR036457 -
Lapu3g00372 386 SMART PP2C_4 68 346 IPR001932 -
Lapu3g00372 386 FunFam Probable protein phosphatase 2C 22 62 351 - -
Lapu3g00372 386 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Lapu3g00372 386 Gene3D - 67 351 IPR036457 -
Lapu3g00372 386 PANTHER PROTEIN PHOSPHATASE 2C 75 346 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00372 Lapu-Chr3 3725914 3727810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00372 1 382 PP2C-type Phosphatase Gene Family AT1G48040 57.761 3.57e-149 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00372 K14803 - gmx:100775577 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00372 3 3725914 3727810 Lapu3g00372 3 3725914 3727810 ECH
Lapu3g00372 3 3725914 3727810 Lapu6g01859 6 18374130 18376706 PCT