Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00367 ATGGATGAAAAAGGAAGAAGAACTGGAAACACCCTTTTGAGTGAGGACGAGATGGACCTTCGAAGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCTGGGCTGAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTGAACTATCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAAGAACAACTTTTGATCCTCGAACTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAGAACTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAACAGCAAACAATTCAAGGACACCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCCTCAGCCACCACCAACAATGCATACACCACTGAGAACAACCTTAAAAACAACGATATAGAGGTTCATGATCTCAAGGACAAAATGGGATTAATGGATGCTTCAGCTATGAACAATGACTTTGTGGGTTCCTATGTCATGCAAAGTCACACTCCAGAGAATAGTAGCACAGCTTTGTCATCATCAGACTCATTTGGGACTCAAGTCTCAACAAAATCTGATCTCACTGATTATTACAGTGTTCCGGTTAGCAGTAACAACAATAATAACACTAATCCTGCAGATTATTATCAACCCTCTCAGATCAGTTACTCCAATTGCATCACAAGCCCACCTGGGTTTCTCCCTCAAGGATTGGATTTTCAATCCCTAGATCCGTGGAACTGGCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTTGAAAACATGTTGTTCTTAGAGCAACATCTCATGAATGACAACATGTGA 942 0.449 MDEKGRRTGNTLLSEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAATASATTNNAYTTENNLKNNDIEVHDLKDKMGLMDASAMNNDFVGSYVMQSHTPENSSTALSSSDSFGTQVSTKSDLTDYYSVPVSSNNNNNTNPADYYQPSQISYSNCITSPPGFLPQGLDFQSLDPWNWQNGDSSDNFWNVENMLFLEQHLMNDNM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00367 313 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Lapu3g00367 313 CDD SANT 24 69 IPR001005 -
Lapu3g00367 313 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Lapu3g00367 313 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 241 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lapu3g00367 313 Gene3D - 79 142 - -
Lapu3g00367 313 Gene3D - 19 75 - -
Lapu3g00367 313 FunFam MYB transcription factor 79 142 - -
Lapu3g00367 313 CDD SANT 95 118 IPR001005 -
Lapu3g00367 313 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lapu3g00367 313 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Lapu3g00367 313 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Lapu3g00367 313 FunFam Myb transcription factor 22 74 - -
Lapu3g00367 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Lapu3g00367 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Lapu3g00367 313 SMART sant 74 122 IPR001005 -
Lapu3g00367 313 SMART sant 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00367 Lapu-Chr3 3670327 3672657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00367 1 253 MYB Transcription Factor Family AT3G06490 61.567 5.39e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g00367 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00367 K09422 - gmx:100791349 503.056