Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00351 ATGACATACCACAACACGCGCCGGAGCCCTTCCGGCTTCCGCTCTGGCGCCGCCCCTAACCACCGCGCCTTCGACAGTCCTCCGCGTCGCTCTCCCGGCAGGGGAGGAGGATTCCGGCCGACGGGCGGCGAGGGTCCTGGGGAATTCGGATTCAACGGCCACCAGCCGCCGCCGCTGGTTGGCCAGAAACGAGGGTTTCCTGTCTCTGGACGCGGTGGCGGTTCACCCGATCGTTTAGATGGTGGAAACTTTGCTAAACTTTTTGTTGGATCCGTTCCCCGAACAGCAGCTGAAGATGATATTCGCCCGTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTTATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTCATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACCCTTCCTGGAGGTGTTGGTCCAATACAAGTGCGATATGCTGATGGTGAACGGGAACGCCTAGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAACAGGCTCCTGTAAAGGAAGTTGAGGAAATTTTCTCCAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTGAAATATTCACACAGAGATATGGCTTTGGCAGCTATTAATGCACTTGATGGAACCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGGGTCTTGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCCCAAGACTTCCATCCAATATTACAGATCCTATGGGGGATCGAATCCCTCCCCCTAATGCTTGGCGACCAATGCATCTGCCAAACATGGCGCCACCCACTAATGCTGGTCTTCATGGCATGGGACCACCAATGCTTCCGAGATCTGGTGAAATGGCTCTGCCTACAAATGCAGGCGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCACTCAATCAACAAATATCACCCTTGCAGAAACCTATTCAATCATCCCAGGAATTGCCATCATCCCATCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTCTTAGACAGCATGGCCAGCCACATCTTCCTCCTTCTGCTGGTTCTCTTCAATCTCAGCAGCAGATACAAGGAGCAAGTGGACAGTTTCCAACTTCTCAACCCCAAACTCAACAGAGTGCTTTCTCTGTTGCATTTCCTCAGACTCCTCTTGACGCCAGCATGCAATCTAATACTGCATTATCTACAAATCAACAGCAAGCTCATTCCTCTGTGCCACAGCAGCCTCTTCAGCAGTCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCATCCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAACAGTCTCAATGGGCTGGGACTGTAGCACAAACAATGGCCAGCACTCATGCAACTGCACCTGCTACAGATGCGCCTACATCCAAACTTGTCACTTCAGCCTTACCAGCAATAAACCATAACACGGCTCCTGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAACAAAGGGTATCTGTTCAGCAGTCTCAAACTCAGTCGCAGCCTTCAGCACTACCTGCCCAGCAAATTCCACAGTTCCAACAGGTTCAGCCCCAGAGTCATCTCCAAGGACAAGTTCTTAACCCGCAACAAGTACAACAGCCTCCTTTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGGCATCGGTTATTTCAGCCGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACAAGAATTGATGTGGAAGAATAAGCCTTCAGGAGTTTGA 2199 0.4839 MTYHNTRRSPSGFRSGAAPNHRAFDSPPRRSPGRGGGFRPTGGEGPGEFGFNGHQPPPLVGQKRGFPVSGRGGGSPDRLDGGNFAKLFVGSVPRTAAEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALDGTYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGPRLPSNITDPMGDRIPPPNAWRPMHLPNMAPPTNAGLHGMGPPMLPRSGEMALPTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQPMPQIPPLNQQISPLQKPIQSSQELPSSHQLYPQAPVPYPQTSLRQHGQPHLPPSAGSLQSQQQIQGASGQFPTSQPQTQQSAFSVAFPQTPLDASMQSNTALSTNQQQAHSSVPQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMHPSSQALTLQQNAEATKKQSQWAGTVAQTMASTHATAPATDAPTSKLVTSALPAINHNTAPAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQSQTQSQPSALPAQQIPQFQQVQPQSHLQGQVLNPQQVQQPPLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGVHSTQELMWKNKPSGV* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00351 732 MobiDBLite consensus disorder prediction 318 452 - -
Lapu3g00351 732 SMART ww_5 588 620 IPR001202 GO:0005515
Lapu3g00351 732 MobiDBLite consensus disorder prediction 713 732 - -
Lapu3g00351 732 SUPERFAMILY WW domain 592 625 IPR036020 GO:0005515
Lapu3g00351 732 SMART rrm1_1 86 162 IPR000504 GO:0003723
Lapu3g00351 732 SMART rrm1_1 177 252 IPR000504 GO:0003723
Lapu3g00351 732 MobiDBLite consensus disorder prediction 707 732 - -
Lapu3g00351 732 ProSitePatterns WW/rsp5/WWP domain signature. 593 618 IPR001202 GO:0005515
Lapu3g00351 732 FunFam flowering time control protein FCA isoform X2 79 171 - -
Lapu3g00351 732 MobiDBLite consensus disorder prediction 469 504 - -
Lapu3g00351 732 CDD WW 590 620 IPR001202 GO:0005515
Lapu3g00351 732 SUPERFAMILY RNA-binding domain, RBD 72 170 IPR035979 GO:0003676
Lapu3g00351 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 166 IPR000504 GO:0003723
Lapu3g00351 732 FunFam Flowering time control protein FCA 172 262 - -
Lapu3g00351 732 Gene3D - 173 264 IPR012677 -
Lapu3g00351 732 SUPERFAMILY RNA-binding domain, RBD 176 277 IPR035979 GO:0003676
Lapu3g00351 732 ProSiteProfiles WW/rsp5/WWP domain profile. 587 620 IPR001202 GO:0005515
Lapu3g00351 732 PANTHER RNA BINDING PROTEIN 52 515 - -
Lapu3g00351 732 Gene3D - 586 637 - -
Lapu3g00351 732 MobiDBLite consensus disorder prediction 1 82 - -
Lapu3g00351 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 256 IPR000504 GO:0003723
Lapu3g00351 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Lapu3g00351 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 150 IPR000504 GO:0003723
Lapu3g00351 732 MobiDBLite consensus disorder prediction 356 452 - -
Lapu3g00351 732 Pfam WW domain 592 618 IPR001202 GO:0005515
Lapu3g00351 732 Gene3D - 80 172 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00351 Lapu-Chr3 3527442 3538238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00351 84 261 Eukaryotic Initiation Factors Gene Family AT4G34110 26.562 1.38e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00351 - - gmx:100798390 1106.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00351 3 3527442 3538238 Lapu3g00351 3 3527442 3538238 ECH