Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00350 ATGGAGGAGAAGAGAGAGAAAGAACCGAACTCAAACTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATCACCATGACCACCACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCATCTTTGACATCATGCCACCTCTTCCACCACCTCCACCACCATCATCTTCCTCCTCCACCCACGATCCAAAAGCTCCCAACTTTGCCTTCATGGACTTGCTGGGTGTCCCTGATTATACCCCTTCTTTATTCGACTGGCCCCAAAACACCGCCGTCACGTCACCACCACTGCCACCAGCCCCCACCCAAATCACCCACGCGCTTCCCTCGCCTGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCTCCGTCTCCCAACTACTCCTCGATTTCCTCCTCGTCGAATGAGGCTGCCGCGGCCGCCGCCCACAAAGCAACTGGAAATGAAGACGAAGCGGAGGAGGATGAAACGACAATAGATGCAGCAGGCAAAGAAGATGACCAAGATCAAGACAAGTCTAAGAATCAGCTGAAGCCAAAAAAGAAGCACCAAAAGAAGCCAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCAGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACACACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAGTGCGTTCGGACCCACCAGTGGACTCTATATGCTGCCACAACAACACCAACAGTTTCGTCATGACCAAGCACAAGCACAAGCACAAGCTCAAGTAGCAATGTTATACAACTCCACCACCACCAGCAGCAGCTCATCATCATCAGCACTGAATGTTGTTAACTCAGCTACTGGTGTGAACAACTTTGCCAATACGTCGTCGTTGAGTGGCTTCCTTCTGCAGAGCCAAGAGAATCAGCGAGGTTTTGCTCCATCTAGGGTGGGAGGTCCTCAGGGTTTGTTCAATGGGCTTCTTCAGGACATGGTGCCAACGCAGATGATGAGTGAAGAGAGGAGAGATCGTGTGTAG 1212 0.533 MEEKREKEPNSNSSSTMANSVAFSDEIPNITMTTTMSFPFSPAFSTIFDIMPPLPPPPPPSSSSSTHDPKAPNFAFMDLLGVPDYTPSLFDWPQNTAVTSPPLPPAPTQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAAHKATGNEDEAEEDETTIDAAGKEDDQDQDKSKNQLKPKKKHQKKPREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFLHSEPSAFGPTSGLYMLPQQHQQFRHDQAQAQAQAQVAMLYNSTTTSSSSSSSALNVVNSATGVNNFANTSSLSGFLLQSQENQRGFAPSRVGGPQGLFNGLLQDMVPTQMMSEERRDRV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00350 403 SMART WRKY_cls 214 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g00350 403 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g00350 403 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 324 IPR044810 GO:0003700
Lapu3g00350 403 MobiDBLite consensus disorder prediction 49 65 - -
Lapu3g00350 403 MobiDBLite consensus disorder prediction 112 150 - -
Lapu3g00350 403 Pfam WRKY DNA -binding domain 215 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g00350 403 SUPERFAMILY WRKY DNA-binding domain 206 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g00350 403 Gene3D WRKY domain 199 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g00350 403 MobiDBLite consensus disorder prediction 96 203 - -
Lapu3g00350 403 ProSiteProfiles WRKY domain profile. 209 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g00350 403 MobiDBLite consensus disorder prediction 49 72 - -
Lapu3g00350 403 FunFam WRKY transcription factor 57 200 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00350 Lapu-Chr3 3517831 3519650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00350 13 397 WRKY Transcription Factor Family AT5G49520 38.213 4.46e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu3g00350 WRKY 2.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00350 - - gsj:114394278 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00350 3 3517831 3519650 Lapu3g00350 3 3517831 3519650 ECH
Lapu6g01878 6 18607347 18609154 Lapu3g00350 3 3517831 3519650 PCT