Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00349 ATGGCATCGTCGTCGTCAGCAGCACCATCATCAATGATCACAAACCCGACAACAGCGAGCACGGAGCGGTCACGTGACGCGAAGAGAAGAAAAAAGAAGAAAGCACAGGAACGAGAGGATGAGAGGCGGCCGAAGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTCAACCTCGGCTCCGCGCCGCCAAAAGGCAAAGCCGTGCGCGAAGCCGCCGACAGGGTCCTAGCCGCGACGGCCAAGGGGAGGACGCGCTGGAGCCGAGCCATCCTCACGAACCGGCTCAAGCTGAAGTTCACCAAACACAAGAGACAGAGAGTGGCAACAACGCCCCCTAGCCGGTCAAAGAAAGCTCGCATCAGCGTTCACCGGCTGAAGGGGAAGAGTGGAGCCAGTGTGCAGAGGAAAGTGAGGTTCCTGGGACGGTTGGTTCCCGGTTGCCGAAAAGAACCGTTACCGGTTGTTCTGGAAGAAGCCATCGATTATATACCAGCGCTTGAGATGCAGGTTCGAGCCATGAACGCTCTCTTTAACCTTCTCTCCGCCGCTTCCTCTTCTTCTTCTTCTTCAACTTCCGGCACCTCCTCATAA 621 0.5652 MASSSSAAPSSMITNPTTASTERSRDAKRRKKKKAQEREDERRPKWKSQAQQQIYSSKLRQALARVNLGSAPPKGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFTKHKRQRVATTPPSRSKKARISVHRLKGKSGASVQRKVRFLGRLVPGCRKEPLPVVLEEAIDYIPALEMQVRAMNALFNLLSAASSSSSSSTSGTSS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00349 206 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g00349 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 194 IPR036638 GO:0046983
Lapu3g00349 206 MobiDBLite consensus disorder prediction 33 47 - -
Lapu3g00349 206 MobiDBLite consensus disorder prediction 1 54 - -
Lapu3g00349 206 CDD bHLH_AtIBH1_like 134 186 IPR044549 GO:0006355
Lapu3g00349 206 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 48 193 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00349 Lapu-Chr3 3481119 3484001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00349 41 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 53.714 3.39e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00349 - - pvu:PHAVU_003G116200g 326.25