Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00338 ATGGGAACTCCACCAACGGATGAACTCGTGAAGAAGATCCAACAGTTAGAAGAAGGACACGCGCACTTGAAGCAAGAAATGTCAAAGCTCAAACTCTCCGATGTGAGACACGGACATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCCAGATTGGGCGCTCCTCCGAGGAGGCGGAGCGATGCACCGGCGGCTGCGTGGAAGAGAGGTTTGTGTTCCTTTAAGCAATCCTCTCCGCTACAGAGAGAGAGCCGAGGCGGTGGCGATCCTCAAGTTCACGGCGGCGGCGGAGGAGGAGAAGGTGCTTCTCCGCGCTGTGGTCCTTCCGCCGTGAATTTCACGGAACGGCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCACATAATATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACAGCAGAGGAAGCTTTAGGGCGGGATGGGATTGAGCTACTTGTAGACCCTAGGGATTTGGGCTTGGCCAATGATACAGTGAACCGTGTGATGATGGGAGAGAACTGGACGGGGCAATTTCCGGTCAAGAATAAGATGGGAGAGAAGTTCTTAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTGGTTGGGATAATTTGTGTCTCTTGTGATTCACGGCCCTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACCGAGTCAGATTTGGACTCGGGTGGAAGTCGAGCTAGAAGTAGCATTACGAACAAACTTGGCTTTGACACTCAGCAGCCACTTCAAGTTGCTCTTGCGTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAAGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGCGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAGTCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCGTCCCATTTTGGTGTGTTTTCTCATGGCGAAGAAAAATCCCAAGGAAAATCTTTGAGAGAGTCCGGTGACGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAAGGATCGAGAAGGTTCAGATGGATCAGAGGGAAGCAATGTTCGTGTTACTGGTTCCTGGAGGCAGAATGATGGAGAAAATGAATCAGTTAATCAGAAGATTCTTTCTTCTGGCTTGAAGCAAGAAAGCCAGGGAGGTGAAAGTAATCGCCCTAATAACAATGAGGTTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAAGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTTAAAGTTTTCTCAAAGCAAGAATACTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGGGCCGTGACTTCACCACAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACTTCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCGCGGGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACCGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAGGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAGTTAAGCATGAAACATATCTCACAACTAAGACTGGAAGGGGCACGCCTCAATGGATGGCACCCGAAGTTCTTCGTAACGAACCCTCCGATGAGAAATCTGACGTTTACAGCTTCGGAGTAATATTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGATTCATGAATCAACGGCTAGAGATTCCAAAAAATGTCGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCACACCGATCCAGCATGCCGGCCAACGTTCCCAGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAACAGTATGCCATTCAGTTCCAGGCAACCCGATCCGCTAGCAAGGAAAGCACCCAAAAGGAGTCCTAG 2331 0.4689 MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPRRRSDAPAAAWKRGLCSFKQSSPLQRESRGGGDPQVHGGGGGGEGASPRCGPSAVNFTERQYLNILQSMGQSVHILDLNCHIIYWNRSAENLYGYTAEEALGRDGIELLVDPRDLGLANDTVNRVMMGENWTGQFPVKNKMGEKFLAVATNTPFYDDDGSLVGIICVSCDSRPFLEMKVPMSGVRNTESDLDSGGSRARSSITNKLGFDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREGGSGESHHSEHSLSESVLSDQREDANSSGASTPRGDVPPSHFGVFSHGEEKSQGKSLRESGDESEGKSIHKIIPAKAEAWIQRKTLSWPWRTKDREGSDGSEGSNVRVTGSWRQNDGENESVNQKILSSGLKQESQGGESNRPNNNEVSGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHSNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSRVKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHTDPACRPTFPELLERLRELQKQYAIQFQATRSASKESTQKES* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00338 776 FunFam PAS domain-containing protein tyrosine kinase 491 575 - -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 297 375 - -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 355 375 - -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 323 338 - -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 78 110 - -
Lapu3g00338 776 Pfam PAS fold 118 224 IPR013767 GO:0006355
Lapu3g00338 776 CDD PAS 126 227 IPR000014 -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 304 322 - -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 395 457 - -
Lapu3g00338 776 ProSiteProfiles Protein kinase domain profile. 498 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00338 776 MobiDBLite consensus disorder prediction 406 457 - -
Lapu3g00338 776 Gene3D Phosphorylase Kinase; domain 1 491 575 - -
Lapu3g00338 776 Gene3D PAS domain 127 229 - -
Lapu3g00338 776 CDD STKc_MAP3K-like 504 750 - -
Lapu3g00338 776 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 198 756 - -
Lapu3g00338 776 Coils Coil 6 33 - -
Lapu3g00338 776 SMART pas_2 117 184 IPR000014 -
Lapu3g00338 776 NCBIfam PAS domain S-box protein 116 224 IPR000014 -
Lapu3g00338 776 Gene3D Transferase(Phosphotransferase) domain 1 576 776 - -
Lapu3g00338 776 Pfam Protein tyrosine and serine/threonine kinase 498 750 IPR001245 GO:0004672|GO:0006468
Lapu3g00338 776 SUPERFAMILY PYP-like sensor domain (PAS domain) 121 224 IPR035965 -
Lapu3g00338 776 ProSiteProfiles PAS repeat profile. 115 186 IPR000014 -
Lapu3g00338 776 MobiDBLite consensus disorder prediction 29 66 - -
Lapu3g00338 776 SMART serkin_6 498 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00338 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Lapu3g00338 776 SUPERFAMILY Protein kinase-like (PK-like) 487 750 IPR011009 -
Lapu3g00338 776 PRINTS Tyrosine kinase catalytic domain signature 658 668 IPR001245 GO:0004672|GO:0006468
Lapu3g00338 776 PRINTS Tyrosine kinase catalytic domain signature 677 699 IPR001245 GO:0004672|GO:0006468
Lapu3g00338 776 PRINTS Tyrosine kinase catalytic domain signature 572 585 IPR001245 GO:0004672|GO:0006468
Lapu3g00338 776 PRINTS Tyrosine kinase catalytic domain signature 611 629 IPR001245 GO:0004672|GO:0006468
Lapu3g00338 776 PRINTS Tyrosine kinase catalytic domain signature 721 743 IPR001245 GO:0004672|GO:0006468
Lapu3g00338 776 FunFam PAS domain-containing protein tyrosine kinase family protein 576 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00338 Lapu-Chr3 3379152 3386885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00338 1 767 MAP Kinase Kinase Kinase AT3G06620 58.643 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lapu3g00338 PK_Tyr_Ser-Thr 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00338 - - pvu:PHAVU_003G114400g 1414.44