Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00313 ATGAATCTGAGCAACGGAAAGGGATCCATGTCAACGGTTACTACAAGCGCGGTTATGAAATCCGGCGACGCTGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTTTTGGTGGTCGACGATGATCCCACGTGCCTCATGATTCTCGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACCAAATGCAATCGAGCTGAGACTGCGCTTTCACTTCTCAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGATAAAAGTGTTGTTATGAAGGGTGTGACTCACGGTGCTTGTGATTACCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAACGAGTGGAAAGACGCAGAGCAATCGGGTAGTGCTGAAGAAGGAGATCGCCAGCCTAAGGCATCTGATGAAGCAGATTACTCTTCCTCGGCTAATGAAGGCAGTTGGAGAAATTCAAAGAAGAGAAGGGACGAGGAGGAGGAGGCAGAGGATAGAGATGACACATCCACGTTAAAGAAGCCGCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTAGATCAGCTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGGTTGTATCTTCGAAGATTGAGTGGAGTTTCTCAGCACCAGAATAATTTGAACAACTCCTTTCTCGGCTCCCAAGAGGCAACATTTGGAACAATTTCTTCAATTAACGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTCCCTGCTCAAAGTCTAGCTACACTTCAAGCAGCTGGACTTGGAAGGTCAACTGCCAAAGCTGGTGTACCAATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCAAGGGTAAGATTTGGAGAAGGTCAACAGCAACATTTAAGCACTAGTAAACCAATGAACTTATTACTTGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCAGCATGAATATGCGAGTCAATGCTTCTGCCACGCAAGGCAACCCCTTAATGATGCAGATGACGCAATCCCAACCTAGAGGTCAAATGCTAAGTGAAAATACTGGTCCTCGTGTTCCCAGACTTCCATCGTCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGCTTTCTGGGCAGAAATGGAATTGCTGGTAATAACAGAGGACCTGCATATAATCCTGTTCCACCAAGCTCTTCGTTGTTGAGTTTTCCAATTAATCAAAGCTCTGACGTGTCTGTCAACAATAGTTTACCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCATTTCAAGAGGAAGTTACATCTGGAATTAAAGCATCTGGTGGATTTCCAAGTTATGATATTTTTAATGAATTGCACCATCAGAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACAGTGCCTCCCATCATGCAAATCCTTTACAAGGTGGCATTGATGTCTCACCATCAGTTTTAGTGCATCAAGGCTTTTCTTCTACCCAGCAGACCGGCCAAAGCAGAGATGCTACTTTAATTGGAAAAGCTATGTTCTCCGTTGGAGAAGGCTCGGAACAAGATAACCTCCAAAATGCTGGCCAACACCTCAATCCGCTTCTTGTTGACAATTCAATAAGGGTTAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGACCATTATGGGCAGGAGGATCTGATGAGTGCACTTCTAAAACAGCAAGAAGGCATGGGACCAGCTGAGAGTGAGTTTGAATTTGATGCATATTCTCTGGACAACATCCCTGTCTAG 2040 0.4529 MNLSNGKGSMSTVTTSAVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDDKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGSQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPLMDQRNLFSFENPRVRFGEGQQQHLSTSKPMNLLLGIPTNMEPKQLANLHQSTQSIASMNMRVNASATQGNPLMMQMTQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGFLGRNGIAGNNRGPAYNPVPPSSSLLSFPINQSSDVSVNNSLPLGSTPGISSITTKGSFQEEVTSGIKASGGFPSYDIFNELHHQKSHDWEITNPGLTYSASHHANPLQGGIDVSPSVLVHQGFSSTQQTGQSRDATLIGKAMFSVGEGSEQDNLQNAGQHLNPLLVDNSIRVKAERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPAESEFEFDAYSLDNIPV* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00313 679 Gene3D - 210 272 - -
Lapu3g00313 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Lapu3g00313 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Lapu3g00313 679 CDD REC_typeB_ARR-like 35 149 - -
Lapu3g00313 679 MobiDBLite consensus disorder prediction 189 210 - -
Lapu3g00313 679 FunFam Two-component response regulator 209 272 - -
Lapu3g00313 679 FunFam Two-component response regulator 33 170 - -
Lapu3g00313 679 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Lapu3g00313 679 SMART REC_2 33 145 IPR001789 GO:0000160
Lapu3g00313 679 MobiDBLite consensus disorder prediction 422 446 - -
Lapu3g00313 679 MobiDBLite consensus disorder prediction 155 210 - -
Lapu3g00313 679 SUPERFAMILY CheY-like 32 155 IPR011006 -
Lapu3g00313 679 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Lapu3g00313 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Lapu3g00313 679 Gene3D - 33 168 - -
Lapu3g00313 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Lapu3g00313 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 377 IPR045279 GO:0009736
Lapu3g00313 679 PIRSF RR_ARR_type-B 13 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lapu3g00313 679 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00313 Lapu-Chr3 3125451 3130204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00313 68 679 Response Regulator Gene Family AT3G16857 51.538 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu3g00313 Response_reg 1.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00313 - K14491 gmx:100814930 1239.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00313 3 3125451 3130204 Lapu3g00313 3 3125451 3130204 ECH
Lapu3g00313 3 3125451 3130204 Lapu9g00080 9 721682 725715 PCT