Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00300 ATGGCTTCAACGGACGTCAGAGGAATTTTGACGGCTTTCAATCCTTCTCTGGACTGCTTCGCTATCACCGCCGGAGACGGTCGCGTCAAGATATGGGACACGCTGAGTGGCCAGGTCCAGACCGAGTTCGCAGATTTTTCGTCAACTCATTCAACAACTACTTTACAGCACAAATCCATTAACGGCCATCTTGCACTAGATTATACCTGCATCAAGTGGTTCTCCTTCGAAAGAAAGAGGAAACGGAAGCATGCATCCTCGTTGTTAGTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGATGTTGCTGCTGGTCATTTGAGTTGGAGAATTACTGACTGTCATCCCGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAAGCATTTATACAGCTGGTGCAGATGGGATGGTATGTGTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACCAAGGCGGTATCCTGCATGTCTGTTTCTCCAGATGGGAAGACATTAGCTACTGCAGCTGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCGAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGGTTTTCACCGAAGATGGCAAGTATGTCCTCTCGTCTGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCATCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAAAGGGGAGCATGACATGACTGGCATATGTGTTTTGGCCATTTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATTGAAGAGCTGCGTAATGCAAAAGCCACAAAAATATCATTATCTTTAGAAGACATGTCCTCCAGAAATTACAAAGGAACTCTGCCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTACTTGTAAAGCCATCATTTAGAAAAATTCTAGTGCATTCTGGTACAGATGTAAAGTTGAATGTCACTCGTGATGGTGTTCTTCTACCAACAAGTCAAGCTCTTGTCAAATCTAAGGGAACAAATGCACTAACAGTTACTGCACTGGATCGAGCTAATGCTGAGGATGCCTTGCTTCCGATTCCTAAGGTTTTTGATTCCCATGAGAATGAAAAAGAGAAAGCATATAAGAAATCTTTGGACAAGGATACCATGGATGATTTGCATAGAAGTAGTAATGATGATTCTGTTGAGATGGAAGATGATATGGCCCATGGTGAGACTAATGAACTTTGCATGGAGGACCTGCTAAAATCACTAGGGATTCTTTCCAGTGAAAGTGAATATGCATCAAAAATTGAACTTTGCTCTAAGTTGTTGAAGGGTATTGATCTGGAAGATACTGTTCCAGTGAAAAAGATAAGAGCAACTGTTTTGTCTATGGAGCCAAGTGAAGCATTCATGCTATTGGAAGCATTACTGGCTGCATGGGAATCAAGATCATCTAGTGGAAAGTATATTCTTCCGTGGATACATAGCATATTAGTGAATCATGCTCACAATGTCATTGCCGTGGAATCTGACACACATACACTTGATTCCTTAGACAAGACTACCAATTTTAGAGGGGCAACACTTCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTGGTGATATCACAGATTGACAAGGCCTCTCAGACTATAAGCCATTCGGTGCATGAACTCCAAACAGAAGAAGATGAAGATGAATATTATCATGAGGGAGATGATACTTCAGAAATAAGTACTGATGATGAAAGCTAG 1854 0.4159 MASTDVRGILTAFNPSLDCFAITAGDGRVKIWDTLSGQVQTEFADFSSTHSTTTLQHKSINGHLALDYTCIKWFSFERKRKRKHASSLLVLGTGSGDVLALDVAAGHLSWRITDCHPGGVRAIASSANVSSIYTAGADGMVCVIDFMTGNLLEKFKASTKAVSCMSVSPDGKTLATAAAQLKIFNCSNHKKIRKFSGHPGSVRCMVFTEDGKYVLSSAVGERYVAVWRIDGAKKQSASCVLAMEHPAVFLDSRCIDKGEHDMTGICVLAISEIGICYLWFGNSIEELRNAKATKISLSLEDMSSRNYKGTLPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGTDVKLNVTRDGVLLPTSQALVKSKGTNALTVTALDRANAEDALLPIPKVFDSHENEKEKAYKKSLDKDTMDDLHRSSNDDSVEMEDDMAHGETNELCMEDLLKSLGILSSESEYASKIELCSKLLKGIDLEDTVPVKKIRATVLSMEPSEAFMLLEALLAAWESRSSSGKYILPWIHSILVNHAHNVIAVESDTHTLDSLDKTTNFRGATLQPLLQLSGRLQLVISQIDKASQTISHSVHELQTEEDEDEYYHEGDDTSEISTDDES* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00300 617 Pfam Dip2/Utp12 Family 483 576 IPR007148 -
Lapu3g00300 617 Pfam WD domain, G-beta repeat 191 227 IPR001680 GO:0005515
Lapu3g00300 617 Gene3D - 143 271 IPR015943 GO:0005515
Lapu3g00300 617 Gene3D - 5 142 IPR015943 GO:0005515
Lapu3g00300 617 PANTHER OS03G0300300 PROTEIN 4 616 - -
Lapu3g00300 617 MobiDBLite consensus disorder prediction 591 617 - -
Lapu3g00300 617 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 231 IPR011047 -
Lapu3g00300 617 SMART WD40_4 3 33 IPR001680 GO:0005515
Lapu3g00300 617 SMART WD40_4 148 185 IPR001680 GO:0005515
Lapu3g00300 617 SMART WD40_4 188 228 IPR001680 GO:0005515
Lapu3g00300 617 SMART WD40_4 105 145 IPR001680 GO:0005515
Lapu3g00300 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 237 IPR001680 GO:0005515
Lapu3g00300 617 MobiDBLite consensus disorder prediction 597 617 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00300 116 227 U-box Gene Family AT2G33340 29.310 2.45e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00300 K14546 - gmx:100815458 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00300 3 3030501 3038522 Lapu3g00300 3 3030501 3038522 ECH