Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00297 ATGGGGAGAATGGGACAAGACTCAGACCCCAAGTCCAAGTTGGTATTAGAGATTTGCTCCATTTCCATGCGCTCTGTGGTATGTGTTCATCACACAGTTCTCTCAAAACCAGCCAATACAACTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAATGCCATTCGCAAGAGGTACCATAAACTGGCCTTACAAGTTCACCCAGATAAGAATAAACACCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCATATGCATGTCTATCTAATGCAGCAAAGAGAAAAGCCTTTGACTTAGAGAGGTATAAGCTTTTCTGCATCGAGTGCAAAAGAATTCCGTATACATCGAGCAATGTCCCTGTCAATTCAGGTGGATCAGGTTTTAAGGCATGGAATATCATCACCAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGAAATGAGAGAAAGATTCATGGACGAGGCTAAGGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCCAGCCAAAATCCGGTTGGCTTTCTACATAGAAGCAAGTCCCTTCATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCGTCGGATTATTTGTACCAAGGCTACCCTCATCTAAGGAGCAATATTTACAGGAATTCTTCAACATTTTGGTACTTGCAGAGAAATAGTATGCTTCACAGTGAAAAGGGAGGAGCGCTGCATGCCTCCCCTGTTTTTGAGGTCCAATCTAGGAGTTTGTTTGCTAGCAAATTCTCTTTTGTCCCGTCAAAATGTTAG 819 0.4188 MGRMGQDSDPKSKLVLEICSISMRSVVCVHHTVLSKPANTTFVDWYCILGVEENAGVNAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLERYKLFCIECKRIPYTSSNVPVNSGGSGFKAWNIITRSRSFKLWRNIREMRERFMDEAKVIENCLRTNSMSRKESPSQNPVGFLHRSKSLHRFEKETPVFNPSDYLYQGYPHLRSNIYRNSSTFWYLQRNSMLHSEKGGALHASPVFEVQSRSLFASKFSFVPSKC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00297 272 PANTHER BNAC03G44070D PROTEIN 23 232 - -
Lapu3g00297 272 ProSiteProfiles dnaJ domain profile. 44 108 IPR001623 -
Lapu3g00297 272 SUPERFAMILY Chaperone J-domain 36 108 IPR036869 -
Lapu3g00297 272 Pfam DnaJ domain 44 105 IPR001623 -
Lapu3g00297 272 CDD DnaJ 44 97 IPR001623 -
Lapu3g00297 272 Gene3D DnaJ domain 43 165 IPR036869 -
Lapu3g00297 272 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Lapu3g00297 272 PRINTS DnaJ domain signature 46 64 IPR001623 -
Lapu3g00297 272 PRINTS DnaJ domain signature 64 79 IPR001623 -
Lapu3g00297 272 PRINTS DnaJ domain signature 80 100 IPR001623 -
Lapu3g00297 272 SMART dnaj_3 43 100 IPR001623 -
Lapu3g00297 272 FunFam Chaperone protein dnaJ 49 isoform A 43 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00297 Lapu-Chr3 2994952 2996275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00297 44 112 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.356 1.04e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00297 - - gmx:100801809 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00297 3 2994952 2996275 Lapu3g00297 3 2994952 2996275 ECH
Lapu3g00297 3 2994952 2996275 Lapu9g00091 9 801408 802672 PCT