Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00293 ATGGTTCTTTTTCCATCTTTTGTGAATGGATTGGCGAGAACCGCGTCAATCAAGAAAGAGAAGAATTGTAAAAGCGAAGATGGAAGGGAAGCTGCAGAAGAATTGGCGAAGGAAGCAAGGAAGAATGAATTGTTATTGAGTTCATCTGGAGTTGTTAAGTCGACCAAGGCCAACAATTTTGTTTCTGTGTTCACTAATAGGGGCCGGAAAGGAGTCAATCAGGATCGTCTTCTTGTTTGGGAGGAATTTGGATGCCAACAAGACATGATGTTCTGTGGAGTTTTTGATGGGCATGGCCCCTGGGGACACTTCGTAGCAAAAAGGGTTAGAAAACTAGTGCCAGCCATTTTGCTCTGCAATTGGCAGGAAAATCTGGCTGCAACATCGCTTGACCTTGATTTTAAGATGGAAGCAGACAAACATATCCATGGATTGGACATGTGGAAGCACTCCTACATCAAGACTTATGCTGCTGTTGATCAGGATCTGAAGCAGCAAACTGGGTTCGATTCATTTCTTAGTGGCACTACAGCATTGACAATTATCAAACAGGGTGAATATCTTATTACAGCAAACATAGGTGATTCTAGGGCTGTCTTGGCAACCACTTCGGAGGATGGCACATTAACTCCACATCAGCTTACCACTGACTTCAAGCCAAATTTACCACAGGAAGCTGAACGCATAACACAGTGTAGAGGGCAGGTATTTAGTTTGGAAGATGAACCAGAAGTGTACAGGGTGTGGATGCCAAACGGTAAAACACCAGGACTAGCGATATCTAGAGCTTTTGGAGATCATTGCATGAAGGACTTTGGACTAATCTCTCTGCCAGATGTAACATACACAAAAATTACCACCAGGGATCACTTTGTCATATTGGCAACAGATGGGGTATGGGATGTTATATCCAACCAGGAAGCAGTGAAGATTGTTTCTGCAACTCCACGTAAAGAAAAAGCAGCTGAAAGGCTCGTTAAATGTGCCATACGTGAATGGAAACGTAAGAAAAGTGGCATTGCTATGGATGACATGTCAGCTATTTGCCTCTTCTTTCACTCCTTCCCTTCCCATCAACTCCCAGCCATTAAAATTGTTGATTAA 1104 0.4312 MVLFPSFVNGLARTASIKKEKNCKSEDGREAAEELAKEARKNELLLSSSGVVKSTKANNFVSVFTNRGRKGVNQDRLLVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPAILLCNWQENLAATSLDLDFKMEADKHIHGLDMWKHSYIKTYAAVDQDLKQQTGFDSFLSGTTALTIIKQGEYLITANIGDSRAVLATTSEDGTLTPHQLTTDFKPNLPQEAERITQCRGQVFSLEDEPEVYRVWMPNGKTPGLAISRAFGDHCMKDFGLISLPDVTYTKITTRDHFVILATDGVWDVISNQEAVKIVSATPRKEKAAERLVKCAIREWKRKKSGIAMDDMSAICLFFHSFPSHQLPAIKIVD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00293 367 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Lapu3g00293 367 SMART PP2C_4 51 350 IPR001932 -
Lapu3g00293 367 Gene3D - 48 354 IPR036457 -
Lapu3g00293 367 PANTHER PROTEIN PHOSPHATASE 40 350 IPR015655 GO:0004722|GO:0006470
Lapu3g00293 367 FunFam Probable protein phosphatase 2C 34 51 354 - -
Lapu3g00293 367 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Lapu3g00293 367 CDD PP2Cc 59 352 IPR001932 -
Lapu3g00293 367 Pfam Protein phosphatase 2C 83 332 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00293 Lapu-Chr3 2969448 2972418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00293 1 353 PP2C-type Phosphatase Gene Family AT3G05640 58.592 8.18e-159 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00293 - - gmx:100817397 666.766