Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00291 ATGTGTGGTGGTGCTATCATTTCTGATTTCATAGACATGGATTTCAGCAATGGTTGGAAATTGAGCACCCAAGACCTCTGCTCTCAGCTCCACACCCTCCACGCCACCTCTTCTTCCACACCCCAACCATCCCACCACACAACCAACAAAGTGGAGGAGCCATGTGAGAAGCTCAAGAAGAAAAGAGTGGTTGCAGTCGCAGAGAAGGGTGCTGCACGAGTACGGAAGAACGCCTACAGAGGAATCAGGCAAAGGCCCTGGGGCAAGTGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTGCGCGTCTGGCTCGGCACCTTCAACACTGCCCAAGAAGCCGCTCGCGCCTACGACGACGCCGCTGTGCGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCCACCACCACCACCACCACCACCACCACCACCACCCTCCCCACAACAACCCGTGCCTCGGCCCCGAGTTGACTGAGCCCTGTTATGAACCAACTTTCAATGAGCACGACGACCACTCGCAACTCGCTCACCATATTTCCAGCCTGGAATCGTTCCTTGGTTTGGAGCATGAACAGGTTCCGATGCACCCACTACCACTTCCCGAGTGGGACCCGCTCCACGACGTCGTTATGCCCAACCCCCACCTCTTCTGA 657 0.5693 MCGGAIISDFIDMDFSNGWKLSTQDLCSQLHTLHATSSSTPQPSHHTTNKVEEPCEKLKKKRVVAVAEKGAARVRKNAYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAQEAARAYDDAAVRIRGDKAKLNFPHHHHHHHHHHHPPHNNPCLGPELTEPCYEPTFNEHDDHSQLAHHISSLESFLGLEHEQVPMHPLPLPEWDPLHDVVMPNPHLF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00291 218 Pfam AP2 domain 79 127 IPR001471 GO:0003700|GO:0006355
Lapu3g00291 218 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Lapu3g00291 218 CDD AP2 79 134 IPR001471 GO:0003700|GO:0006355
Lapu3g00291 218 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Lapu3g00291 218 FunFam Ethylene-responsive transcription factor 2 77 136 - -
Lapu3g00291 218 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Lapu3g00291 218 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
Lapu3g00291 218 PANTHER DNA-BINDING DOMAIN 48 164 IPR044808 GO:0003700|GO:0009873
Lapu3g00291 218 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Lapu3g00291 218 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00291 Lapu-Chr3 2955107 2956181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00291 1 190 AP2-EREBP Transcription Factor Family AT3G16770 45.045 9.78e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu3g00291 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00291 K09286 - gmx:100527415 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00291 3 2955107 2956181 Lapu3g00291 3 2955107 2956181 ECH
Lapu3g00291 3 2955107 2956181 Lapu9g00094 9 842635 845034 PCT