Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00287 ATGGATGCGTTTAAGCAGCAGAAGAAAAAGACAGGGCGGAAAAAGATTGAGATAAAGAAGATCGAGAAGCCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAGAAAGCGAGTGAACTGTGCATCTTGTGCAATGTCAATATAGCCATGATTGTGTTTTCTCCTGCTCAGAAATTATTCTGCTTCGGCCATCCACACTTCGAGGGCATTGTTGAAAGCTATCTGAAAGGTGCCAAGGTGTTTGAACCACTGGAGTCAAGGGAGAGATCAGTGTCGTACGAAGAGTGCAACAAGCAATACGAGGAGGCAATGAAGAATTTGGAGTTGGAAAAGAAGAATCTGAGAGAAACTGAAACTCTGGTTAAGGGTTGTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGACTGAAAGTGAGTTGGAACAGTTTATGGTGTCTGTTTATGAGTTGAGGAGAAAATTAGCCGAAAGGGGTGCTGAATTGTTGATGCAATCAATGCTATAG 522 0.4272 MDAFKQQKKKTGRKKIEIKKIEKPSNKQVTFSKRRTGLFKKASELCILCNVNIAMIVFSPAQKLFCFGHPHFEGIVESYLKGAKVFEPLESRERSVSYEECNKQYEEAMKNLELEKKNLRETETLVKGCNRRWWEDPIDQMTESELEQFMVSVYELRRKLAERGAELLMQSML* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00287 173 PANTHER MADS BOX PROTEIN 13 160 - -
Lapu3g00287 173 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Lapu3g00287 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Lapu3g00287 173 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Lapu3g00287 173 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Lapu3g00287 173 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Lapu3g00287 173 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Lapu3g00287 173 FunFam Agamous-like MADS-box protein AGL62 23 87 - -
Lapu3g00287 173 Coils Coil 95 125 - -
Lapu3g00287 173 Gene3D - 24 95 IPR036879 GO:0003677|GO:0046983
Lapu3g00287 173 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00287 Lapu-Chr3 2938253 2938801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00287 8 158 Type I MADS-box Gene Family AT5G60440 38.125 2.58e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g00287 SRF-TF 4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00287 - - vra:106766532 292.737