Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00286 ATGGCGAGTGGATTTGATAGTGCTCATGAGAAGAAGAAGAAGCTCGCTGTTCTGACCGTGTCTTCCGTTCTCCTCGTGGCGATGGTTGCCGCGGTGGCCGTTGGCATAAGAGACACCGCCGAGGTCGTCCAGGAAGGAGGTGATGGTGGCATCGCAAAATCTCAGAGGAATGTGCAAGTGATATGTCAATCCGCCGAATACAAAGAAACCTGCCAAAAGAGTCTCGCCAATGCTTCCGATGAAAACACTGACCTCAAGCAGCTTATCATTACCGCGTTTAAAGCCACCACCGAGGAGATTCGCAGCAAAATTAAAAACTCAACGCTCTACCATGAGTTAGCCACCGACAGCATGACCAAACAGGCCATGGACATTTGCAAGGAAGTACTAGGCTACGCTGTGGATGATATGAACGCATCCACCGCCATGTTGGAGAAGTTTGACCTAAACAAGTTGAACGACTACGCCTATGACCTCAAGGTGTGGATCTCAGGTACCCTTGCTCACCAGCAAACATGCTTGGACGGGTTCGAGAACACGACCACCGAGGCTGGGAAGACCATGAGTAGGGTTCTGAACGCGTCGTTGGAGCTGAGCAACAACGCGTTGGACATAGTGAACGGTGTTTCGACTCTCTTCAAGGGTCTTAACTTCACCTCGTTCACCGCCAACAATAGGAAGCTTCTCGCGGAAGAGCCTATGGTCGATGGGTTTCCTGCGTGGGTGAGTGAAGGGCAGAGAAACATTCTGCAGGCTGCTGAACCCAAACCCGACGTGGTGGTAGCTCAGGATGGGAGTGGACAGGTGAAGACAATCCACGAGGCTCTCAAACTGGTGCCTAAAAAGAACAAGAGCCCTTTTGTGATTTACATTAAGGCCGGTATCTATAGAGAGTATGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGTGATGGCCCCACCCTCACCAGAATCACCGGCGACAAAAACTACGTCGATGGCGTCCAAACCTACAACACCGCAACCGTCGGTGTGAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACTCGGCAGGAGCAGAGAAGCACCAAGCAGTGGCTCTGAGGGTAACAGCAGACAAGGCAGTGTTCTACAACTGCAACATGGACGGCTACCAAGACACCCTCTATACCCAGTCCCAGCGCCAGTTCTACCGCGACTGCACCGTGAGCGGCACCGTGGACTTTGTCTTCGGCGACGCCATCGCCGTCTTCCAGAACTGCAAGTTCATCGTGAGGAAGCCGATGTCGAACCAGCAGTGCATGGTGACCGCCGGCGGAAGGAGCAAGATCGACAGTCCCAGCGCCCTGGTCTTCCAGAGCTGCATCTTCACCGGAGAGCCCGACCTTGTGGCTGTGATCCCGAAGATCTCGTACCTCGGAAGGCCCTGGAGGGTTTACGCGAAGGTGGTGATCATGGACTCCCAGATCGATGACATCTTCCTCCCAGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAAAGATACCAGCACCTACTACGAGTTCAACAACAGGGGTCCTGGGGCGAACACCGTTGGAAGAATCACGTGGCCAGGTTTTAAGGTCATTGACTCCACTGAGGCCGCTGATTACTACCCTGGCAAGTTCTTTGAGATCGCTAACTCCACTGATCGTGACTCCTGGATCCTTCAGTCTGGGGTGCCCTACTCCCTCGGCCCACTTCCACCAACCACCGCTATGCCAGCAGTTTAA 1752 0.5337 MASGFDSAHEKKKKLAVLTVSSVLLVAMVAAVAVGIRDTAEVVQEGGDGGIAKSQRNVQVICQSAEYKETCQKSLANASDENTDLKQLIITAFKATTEEIRSKIKNSTLYHELATDSMTKQAMDICKEVLGYAVDDMNASTAMLEKFDLNKLNDYAYDLKVWISGTLAHQQTCLDGFENTTTEAGKTMSRVLNASLELSNNALDIVNGVSTLFKGLNFTSFTANNRKLLAEEPMVDGFPAWVSEGQRNILQAAEPKPDVVVAQDGSGQVKTIHEALKLVPKKNKSPFVIYIKAGIYREYVNLNKHMSFVTMIGDGPTLTRITGDKNYVDGVQTYNTATVGVNAANFMAKNIGFENSAGAEKHQAVALRVTADKAVFYNCNMDGYQDTLYTQSQRQFYRDCTVSGTVDFVFGDAIAVFQNCKFIVRKPMSNQQCMVTAGGRSKIDSPSALVFQSCIFTGEPDLVAVIPKISYLGRPWRVYAKVVIMDSQIDDIFLPEGYMPWMGSAFKDTSTYYEFNNRGPGANTVGRITWPGFKVIDSTEAADYYPGKFFEIANSTDRDSWILQSGVPYSLGPLPPTTAMPAV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00286 583 ProSitePatterns Pectinesterase signature 1. 283 302 IPR018040 -
Lapu3g00286 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Lapu3g00286 583 PANTHER PECTINESTERASE 22 562 - -
Lapu3g00286 583 Pfam Pectinesterase 258 549 IPR000070 GO:0030599|GO:0042545
Lapu3g00286 583 SUPERFAMILY Pectin lyase-like 255 571 IPR011050 -
Lapu3g00286 583 SMART PMEI_2 53 205 IPR006501 GO:0004857
Lapu3g00286 583 FunFam Pectinesterase 4 255 573 - -
Lapu3g00286 583 NCBIfam pectinesterase inhibitor domain 52 208 IPR006501 GO:0004857
Lapu3g00286 583 CDD PMEI-like_3 61 211 - -
Lapu3g00286 583 FunFam Pectinesterase 54 210 - -
Lapu3g00286 583 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Lapu3g00286 583 Gene3D - 256 574 IPR012334 -
Lapu3g00286 583 Pfam Plant invertase/pectin methylesterase inhibitor 58 205 IPR006501 GO:0004857
Lapu3g00286 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00286 Lapu-Chr3 2930842 2932807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00286 1 574 Carbohydrate Esterase AT3G05610 44.905 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00286 K01051 - gmx:100820068 947.192