Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00285 AACAACGACAACATGGAAAACGACGAAGACAAGGAAATCAAAGCAAATGACTACGCGCTCAGCGGCAAGATAATGCTAACCGCCATCGTCGTTCTCTTCGTCGTCATCGTCATAATGCTTTGCCTCCACGTCTACATCCGCTGCAGTCTTGTTCGTGCTCGCCGCCGGCAACAACTCCGCCGAAGCAGAAACCGCCCGCAGTTCGTGTTCTACATCAACCCCGCAGCCCGCATTGCCCTCACCTCACGCGGCCTCCACCCCTCCGTCATCTCCACGCTCCCAGTCTTCACCTTCTCCCCTTCCACCCAGCCATCGGAATGCGCTGTTTGTCTGTCGGAGTTTGAGTACGGGGAAACGGGTCGGATCTTACCCAAATGCAACCACTGTTTCCACACTGGGTGCATCGACATGTGGTTCCAGTCCCATGCTACGTGTCCGCTTTGCAGGGAGCCTGTTGAGGCCATTCCCGATCGAGAAACCCGATCTGAGGTGGCTGTTGTTGTGTGTGAACCTGAAGCGGTTCGGGAAGAGGTGGAGCGGTCTATACCAGTAGATTCTTCTTCTGCGTTGCGTAACGAGAGTTCGGGGCGTGAGACGGAATCGTCCTTTTTTCCCCCGGTGAGTCGGATAGTGTCGTTGAAGAAGATTCTGAGTAGAGAGAAGGGAAGCTTTTCGGGGCGTGTTACGACCGAATTAGACGCAGAACGGGGAGAGTGTAACTCGGTGAGTTGT 732 0.5478 NNDNMENDEDKEIKANDYALSGKIMLTAIVVLFVVIVIMLCLHVYIRCSLVRARRRQQLRRSRNRPQFVFYINPAARIALTSRGLHPSVISTLPVFTFSPSTQPSECAVCLSEFEYGETGRILPKCNHCFHTGCIDMWFQSHATCPLCREPVEAIPDRETRSEVAVVVCEPEAVREEVERSIPVDSSSALRNESSGRETESSFFPPVSRIVSLKKILSREKGSFSGRVTTELDAERGECNSVSC 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00285 244 CDD RING-H2_EL5-like 106 149 - -
Lapu3g00285 244 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lapu3g00285 244 MobiDBLite consensus disorder prediction 185 202 - -
Lapu3g00285 244 SUPERFAMILY RING/U-box 91 156 - -
Lapu3g00285 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 154 IPR013083 -
Lapu3g00285 244 SMART ring_2 107 148 IPR001841 -
Lapu3g00285 244 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 157 IPR044675 -
Lapu3g00285 244 MobiDBLite consensus disorder prediction 180 202 - -
Lapu3g00285 244 FunFam E3 ubiquitin-protein ligase ATL6 74 155 - -
Lapu3g00285 244 Pfam Ring finger domain 106 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00285 Lapu-Chr3 2921496 2922227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00285 18 237 Rapid Response to Elicitors AT3G16720 40.580 6.75e-48 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00285 - - gmx:100800859 303.908