Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00270 ATGGAGGAGCCTCAGTACCGGGAACATCCCAAAACCAAAATCGCCGCCATTCCGCCGCCGCAGCACTCTGACGGCGCCTCTGCGGAGTTGGGCGGCGTCGATTGCAACCTCGCTTCCCTATGCGAGCATGTCCAAATCGAAGGCTTCAATTCGGGTTCCTTCTCCGATATTGTCGTCAATGCCATGGGTTCCACTTATCACCTTCATCGGCTTATCCTCTCTCGCAGTTCCTATTTCAGGAACATGCTTCACGGGCCTTGGAAAGAAGCCAGTGCTCCTGTTGTGACTCTGCATGTTGATGATAAGAATGTTAATGATGAGGCAATTGCAATGGCTTTGGCATACCTATACGGGCACCACCCTAAGCTTAATGATAATAATGCATTTCGCGTTCTTGCTGCCGCTTCCTTCCTTGACCTTCAGGATTTATGTGGATTTTGTACAGATTTCATTATATCTGAGCTATGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATTCATGGGGAACGTGTTAGAACTGCATGCTGGGGTTACCTTTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCACAAACCTTACATGCATTACTCACTTCTAATGATCTGTGGATACCCAATGAAGAGAAACGGTTTGACTTGGCTTTGCACACATTCCTGGCAAAAGGTGCTCACTGCAAGGTTGAACATCCTTCACACGGAATTAGCAGTTCCGAGTCTGCTACTGGTATTCATGCTGATTCTATTAATAGCAAAGGAAAAAGTGTAATTGATAGCTGCACTAGTAAGAGGTTGGAAACTGACATGGGGAAAATGAATCTTAAGAGTGATCTAAAGGACCCTAGCACTCCAAGTGTTCTAGTTGAACTTTCAGATCCAGTGGCAGACTTCAATGATGGGGTTTCGGTTTCCAATGAACGGATTCAACAAGCTTCATATGTCAGTTCACCTAACCTGAATCCTAGATATTCTTGTGACATGGAAGGACCATCATTGGGTAATTCGTTGCCTGATACAGATGGGATGAGAACATCATGCTATGTGGAGATGCCTCTTGGAGCTGGAGCAACTGTTATGGCAGCACCTGGCATGGGTATTGAAGGGCCATCTGAAGAAGGACCTTGCTACCAGTTGGAGGACAATAGTTGGTTAGTTAGGGATCAATCAAGACATTGCTTTTCGTCAAATTCTTGTAATGAGGTCACATCCAATGATTGGGGAAGATATGGAACACCTTTATTTTCATGGAATGGCCAAGGTGTGGGCAGAAGACACCTTAAAGCTCACCCTAGAGGAAACTACAGATGTCATGGAGACGAATATGATGCATTTTTTAATATATTTGAAGGGGGATCCCTTTTATATTGCAATATGTCTTTTGATGCACTTCTAAATGTCAGAAAGCAACTTGAGGAATTAGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTTCAGATGCTTCTTAGTCAGAGAGTACAGGAAATTGCTGCTGATACATGCAAAGTTTGCTCCCTCATGAATTGCACTTGTCAGAAGCAATTTGCATTTTCACATGGAGCTTCTACTACTGGATCTTACATGCAAGACCATAATCAGAACATTATGCCTGGCAGTGTGGGAAATATATATGTTGCTGAATCTTCCGCCGGTGAAAGAAATGGCCTTTTTAGACCTGTACGAGTGCATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGACGTGGAACTACTTTTGTTCCAGCATCTGCTTGGCCTCCTACGCGATATGTCTATTCTCGTGTACCATTTGGTGTTGGCAACAGAAACTATCCTCAATCTGCAGCCAATGATGATTCAGAAACACGAGCTGACCCCAATGGAGACCTGTCTGGAGATGGGTTGACAGCTGTAGTTGGGCTAAGCCAGGGAGGGAGTAATGGAACAAATGTACATACAGAGCTAACACAAAGGGGATATGAAATGGGCATGCAAAGCAGCATGTCTGGAAGTACTGCTGGAGATGCAAGTACGGGTGGTATTCCCATGCAGATATTAGAGACACCAGAACATACCATTGGTATAGAATGGGACAATGTCAACAGTACTTCTATATCTCTGGATATGAAAACACCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTACGTTTTGAGGATGTGCATAGGCTTGGTGATGGCCAGGTTAAGCATTCTCCAGAAGTTTTCTACGCTGGTTCTTTGTGGAAGGTCAGTGTACAAGCCTTTAATGATGAAGACCCCGGGGGACGGCGAACCCTTGGGTTGTTTCTTCATCGTCGGAAAGCAGAGATAACTGATATACATAGAAAGGTGCACATGTATGTTGACTCACGTGAAAAGGTGACTGCACGCTACCAGTTGACTGTCCCATCCAAGAGGGAAATGATGGTGTTTGGAAGCTTTAAACAAACAGGCACACTTCTACCTAAATTTCCCAAGGGGTGGGGTTGGCGAACTGCTCTGCTATTTGATGAGCTTGCTGATCTTCTCCAAAACGGCGCCCTAAGGGTCATTGCTGTAGTGCAGCTTGTATGA 2601 0.4491 MEEPQYREHPKTKIAAIPPPQHSDGASAELGGVDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNDEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCGFCTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWIPNEEKRFDLALHTFLAKGAHCKVEHPSHGISSSESATGIHADSINSKGKSVIDSCTSKRLETDMGKMNLKSDLKDPSTPSVLVELSDPVADFNDGVSVSNERIQQASYVSSPNLNPRYSCDMEGPSLGNSLPDTDGMRTSCYVEMPLGAGATVMAAPGMGIEGPSEEGPCYQLEDNSWLVRDQSRHCFSSNSCNEVTSNDWGRYGTPLFSWNGQGVGRRHLKAHPRGNYRCHGDEYDAFFNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMNCTCQKQFAFSHGASTTGSYMQDHNQNIMPGSVGNIYVAESSAGERNGLFRPVRVHVRGAIDGLAGIGRGTTFVPASAWPPTRYVYSRVPFGVGNRNYPQSAANDDSETRADPNGDLSGDGLTAVVGLSQGGSNGTNVHTELTQRGYEMGMQSSMSGSTAGDASTGGIPMQILETPEHTIGIEWDNVNSTSISLDMKTPLSHFPPFRFGVRFEDVHRLGDGQVKHSPEVFYAGSLWKVSVQAFNDEDPGGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLTVPSKREMMVFGSFKQTGTLLPKFPKGWGWRTALLFDELADLLQNGALRVIAVVQLV* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00270 866 SUPERFAMILY POZ domain 49 153 IPR011333 -
Lapu3g00270 866 SMART BTB_4 55 155 IPR000210 GO:0005515
Lapu3g00270 866 Pfam BTB/POZ domain 49 153 IPR000210 GO:0005515
Lapu3g00270 866 MobiDBLite consensus disorder prediction 618 638 - -
Lapu3g00270 866 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 17 866 - -
Lapu3g00270 866 ProSiteProfiles BTB domain profile. 55 125 IPR000210 GO:0005515
Lapu3g00270 866 MobiDBLite consensus disorder prediction 1 25 - -
Lapu3g00270 866 Gene3D Potassium Channel Kv1.1; Chain A 33 188 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu3g00270 BTB 1.9e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00270 - - gmx:100806711 1641.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00270 3 2785526 2791586 Lapu3g00270 3 2785526 2791586 ECH