Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00251 ATGTACCTCCAATCTCATTCAATGAACACCATTCTCCGCCACCGCCTAAGGCTAAGTCCGAGACCTATTCTCTGTTATTTCCCCAAATCCCTTTTCCCTCAAACCTCTCTCCTTTTCCCAACAACCACTTCTGATCCCCACACCTTCACCATATCCTATCTCACCCACGCTTGCGGCTTCTCGCACGAGCTCGCACTTAAACTATCCAAACGACTTCGTTTCAAAACCTCCCAAAAACCCGATTCCGTCATCTCCTTCTTCCGAACCCACGGTTTCTCCGCCTCCCAGATCCAACGCATCTTCACCAGAGTCCCCGATCTCATGCTATGCGACCCCACCAAAAGGATTCTCCCCAAATTCCAATTCTTAGCCTCCAAAGGCGCTTCTCCCTCCGACACCGTTCTCGTCATCACCAGGAGCCCCCGTTTCCTCCGTCCCAGCCTCAACAACCACATCACTCCCATCTTCGAACTGATCCGAGCGTTCTTTCCCTCCGACCTCAAAGCTATCGCTGTTCTCATCCTCTGTCCCAATTTCATTGGCGACTCTCGCGTTGCATCCAACATTCAGATGTTGCTCGATGCCGGAGTCACGCACTCCGGCATTCGCTGTTTGCTCCGCCGTCGGCCTTCGGTTCTCTGCTCCGACCTGAGAAACGTCGTGGAGGAAATGAAGTTGTTCGGGTTTGACCCCAGGAAGGTAAGCTTTGTTTCGGCGCTTGTGGCCAAAAAGGCTGTTCTGAAACCCCGTTGGGATGCCAAAGTAGACGCCTTGAAGAAATGGGGTTGGTCCGAGGATGAGATTTTGGTTGCGTTTAAGAAGCAGCCTAACTTGATGCTGCACTCGTTGGCGAAACTCAATGCAGTGATGGGGTTTTGGGTTGGTCGGCTTGGTTGGGATCGTTCCACGCTTATTGCGTACCCAGTGTTGTTTTCATTCAGTTTGGAGAAAAGGATTGCTCCGAGGGCTTTGGTTGTGCAATATCTTCTCTCCAAAGGATTGGTGAAGAAGGGTGCTAGCTTGGTCACACCCTTTGGTGGGTCTGATGAAATGTTTCTGCAAAAGTATGTGAGACGTTTCAAGGAGGAAACACCCAGATTACTACAGCTATATCAGAATGGACAGGGAACTAGCTAG 1137 0.5084 MYLQSHSMNTILRHRLRLSPRPILCYFPKSLFPQTSLLFPTTTSDPHTFTISYLTHACGFSHELALKLSKRLRFKTSQKPDSVISFFRTHGFSASQIQRIFTRVPDLMLCDPTKRILPKFQFLASKGASPSDTVLVITRSPRFLRPSLNNHITPIFELIRAFFPSDLKAIAVLILCPNFIGDSRVASNIQMLLDAGVTHSGIRCLLRRRPSVLCSDLRNVVEEMKLFGFDPRKVSFVSALVAKKAVLKPRWDAKVDALKKWGWSEDEILVAFKKQPNLMLHSLAKLNAVMGFWVGRLGWDRSTLIAYPVLFSFSLEKRIAPRALVVQYLLSKGLVKKGASLVTPFGGSDEMFLQKYVRRFKEETPRLLQLYQNGQGTS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00251 378 PANTHER CGI-12 PROTEIN-RELATED 47 361 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 SMART mt_12 203 230 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 SMART mt_12 170 198 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 Pfam mTERF 253 352 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 Pfam mTERF 84 230 IPR003690 GO:0003690|GO:0006355
Lapu3g00251 378 FunFam Mitochondrial transcription termination factor-like 148 364 - -
Lapu3g00251 378 Gene3D Transcription termination factor 3, mitochondrial 169 368 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00251 Lapu-Chr3 2629790 2631292 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu3g00251 mTERF 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00251 K15032 - gmx:102666739 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00251 3 2629790 2631292 Lapu3g00251 3 2629790 2631292 ECH
Lapu3g00251 3 2629790 2631292 Lapu9g00137 9 1223472 1227522 PCT