Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00250 ATGTACCTCCATTCTTACACAATGAACACCATTCTCAGCCACCGTCGAAGGCTAAGTCCGACACCTATTCTGTATTCTTTCCTCAAATCCCTTTTCCCCCAACCCTCTCTCTTTTTCTCAACAACCACTTCTGATCCCCACACCTTCACCATATCCTATCTCACCAACACCTGCGGCTTCTCGCATGAACTCGCACATAAACTATCCAAACGACTTCATTTCGAAAGCTCCCAAAAACCCGATTCCGTCATCTCCTTCTTCCGAACCCATGGTTTCTCCACCTCCCAGATCCAACGCATCTTTACCCAAGCTCCCGATCTCATGCTATGCGACCCCACCAAAAGGATTCTCCCCAAATTCCAATTCTTAGCCTCCAAAGGCGCTTCTCCCTCCGACACCGTTCTCACCATCTCCAAGAGCCCCCGTTTCCTCCGTTACAGTCTCAACAACCACATCACTCCCATCTTCGAATTGATCCGAACGTTCTTTCCCTCCGACCTCAAAGCCGTCGCTGTTCTCGTCGCCTGTCCCAATTTCATTGGCGACTCTCGCGTTGCCTCCAACTTTCAGATGTTGCTCGACGCCGGAGTCAAGCACTCCGGCATTCGCTACTTGCTCTGCTCTCGGCCTTCGGTTCTCTGCTGTGACCTGAAAAACGTCGTGGAGGAAGTGAAGCTATTGGGGTTTGACCCTTTCAAGCTGAGCTTCGCTCTGGCGCTTCTGGCCAAAAGGGCTGTTTCGACACACCTTTGGGAAGCTAAAGTCGACGCCTTGAAGAAATGGGGTTGGTCCGAGGATGAGATTTTGGTTGCGTTTAAGAACCAGCCTAACTTGATGCTGCGCTCCACGGATAAACTCAATGCAGTGATGGGGTTTTGGGTTGGTCGGCTTGGTTGGGATCGTTCCACGCTTATTACGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTTGCTCCGAGGGCTTTGGTTGTGCAATATCTTCTCTCCAAAGGATTGGTGAAGAAGGGTGCTAGCTTGGTCACGCCGTTTGGTATGTCCGAAGAAATGTTTCTGCAGAAGTATGTGAGACGTTTCAAGGATGAAACGCCCAGATTACTAGAGCTATATCATGAGGGACAGGGAACATGCTAG 1137 0.5022 MYLHSYTMNTILSHRRRLSPTPILYSFLKSLFPQPSLFFSTTTSDPHTFTISYLTNTCGFSHELAHKLSKRLHFESSQKPDSVISFFRTHGFSTSQIQRIFTQAPDLMLCDPTKRILPKFQFLASKGASPSDTVLTISKSPRFLRYSLNNHITPIFELIRTFFPSDLKAVAVLVACPNFIGDSRVASNFQMLLDAGVKHSGIRYLLCSRPSVLCCDLKNVVEEVKLLGFDPFKLSFALALLAKRAVSTHLWEAKVDALKKWGWSEDEILVAFKNQPNLMLRSTDKLNAVMGFWVGRLGWDRSTLITSPTLFSYSLEKRVAPRALVVQYLLSKGLVKKGASLVTPFGMSEEMFLQKYVRRFKDETPRLLELYHEGQGTC* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00250 378 FunFam Mitochondrial transcription termination factor-like 148 364 - -
Lapu3g00250 378 Gene3D Transcription termination factor 3, mitochondrial 165 363 IPR038538 -
Lapu3g00250 378 Pfam mTERF 84 222 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 Pfam mTERF 251 352 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 SMART mt_12 170 198 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 SMART mt_12 203 230 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Lapu3g00250 378 PANTHER CGI-12 PROTEIN-RELATED 47 361 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00250 Lapu-Chr3 2624755 2626484 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu3g00250 mTERF 4.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00250 K15032 - gmx:102666739 336.265