Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00249 ATGAACGCCATTCTCAGCCACCGCCCAAGGCTAAGTCCGACACCTATTCTATATTCTTTCCTCAAATCCCTTTTCCCCCAACCCTCTCTCTTTTTCTCGACAACCACTTCTGATCCCCACACCTTCACCATATCCTATCTCACCAACACCTGCGGCTTCTCCAACGAGCTCGCACTTAAACTATCCAAACGACTTCGTTTCGAAACCTCCCAAAAACCCGATACCGTCATCTCCTTCTTCCGAACCCATGGTTTCTCCGCCTCCCAGATCCAACGCGTCTTCACCCGAGTCCCCGATCTCATGCTATGCGACCCCACCAAAAGGATTCTCCCCAAATTCCAATTCTTAGCCTCCAAAGGCGCTTCTCCCTCCGACACCGTTCTCGCCATCACCAGGAGCCCCCGTTTCCTCCGTCACAGCCTCAACAACCACATCATTCCCATATTCGAACTGATCCGAACGTTCTTTCCCTCCGACCTCAAAGCTATCGCTGTTCTCATCGCCTGTCCCAATTTCATTGGCGACTCTCGCGTTGCCTCCAACGTTCAGATGTTGCTCGACGCCGGAGTCACGCACTCCGGCATTCATTACTTGCTCAGCTCTCGGCCTTCAGTTCTCTGCTCTGACCTGAGAAACGTCGTGGAGGAAGTGAAGCTGTTGGGGTTTGACCCTTTCAAGCTGAGCTTCGCTCTGGCGCTTCTGGCCAAAAAGGCTGTTTCGAAACACCTTTGGGAAGCTAAAGTCGACGCCTTGAAGAAATGGGGTTGGTCCGAGGATGAGATTTTGGTTGCGTTCAAGAACCAGCCTAACTTGATGCTGCGCTCCACGGATAAACTCAATGCAGTGATGGGGTTTTGGGTTGGTCGGCTTGGTTGGGATCGTTCCGCGCTTATTGCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTTGCTCCGAGGGCTTTGGTTGTGCAATATCTTCTCTCCAAAGGATTGGTGAAGAAGGGTGCTAGCTTGGTCACACCGTTTGGTGTGTCTGAAGAAATGTTTCTGCAAAAGTATGTGAGACGTTTCAAGGAGGAAACGCCCAGGTTACTACAGCTATATCAGGATGAACATGGGACTTGCTAG 1116 0.5125 MNAILSHRPRLSPTPILYSFLKSLFPQPSLFFSTTTSDPHTFTISYLTNTCGFSNELALKLSKRLRFETSQKPDTVISFFRTHGFSASQIQRVFTRVPDLMLCDPTKRILPKFQFLASKGASPSDTVLAITRSPRFLRHSLNNHIIPIFELIRTFFPSDLKAIAVLIACPNFIGDSRVASNVQMLLDAGVTHSGIHYLLSSRPSVLCSDLRNVVEEVKLLGFDPFKLSFALALLAKKAVSKHLWEAKVDALKKWGWSEDEILVAFKNQPNLMLRSTDKLNAVMGFWVGRLGWDRSALIASPTLFSYSLEKRVAPRALVVQYLLSKGLVKKGASLVTPFGVSEEMFLQKYVRRFKEETPRLLQLYQDEHGTC* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00249 371 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 FunFam Mitochondrial transcription termination factor-like 141 357 - -
Lapu3g00249 371 Gene3D Transcription termination factor 3, mitochondrial 174 361 IPR038538 -
Lapu3g00249 371 Pfam mTERF 77 214 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 Pfam mTERF 241 345 IPR003690 GO:0003690|GO:0006355
Lapu3g00249 371 PANTHER CGI-12 PROTEIN-RELATED 40 354 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00249 Lapu-Chr3 2614954 2620319 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu3g00249 mTERF 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00249 K15032 - gmx:102666739 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00249 3 2614954 2620319 Lapu3g00249 3 2614954 2620319 ECH