Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00247 ATGTTGTCTTGGTCAATAAAGAGAGTAGTTCAACTGTTGTTGTTGAATTCATTCCTTCCAAAGATGGTGGATAACGTTGGAGGCACTTCCTCTAATCCTGAAAATAGTGGCATCAGGGAGCAAGACCATTTGTTGCCAATAGCCAACGTTGGGAGGATCATGAAGCAGATTCTGCCACCTAACGCAAAAATCTCAAAGGAATCGAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTCATAAGCTTTGTGACGAGCGAGGCATCAGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAACGGAGATGACATATGCTGTGCCTTAGGGTCGCTTGGTTTTGATGACTATGCAGAGCCATTGAGAAGGTATTTGCACAGATATAGAGAACTGGAAGTAGATAGACCAGCTATCCAAGAGAGAGGAAATAGCCCCTCAAAAGAGAAGAATGCTGAATTCTGA 459 0.4401 MLSWSIKRVVQLLLLNSFLPKMVDNVGGTSSNPENSGIREQDHLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICCALGSLGFDDYAEPLRRYLHRYRELEVDRPAIQERGNSPSKEKNAEF* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00247 152 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Lapu3g00247 152 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Lapu3g00247 152 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Lapu3g00247 152 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu3g00247 152 FunFam Nuclear transcription factor Y subunit B-6 33 150 - -
Lapu3g00247 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 108 IPR003958 -
Lapu3g00247 152 Gene3D Histone, subunit A 32 151 IPR009072 GO:0046982
Lapu3g00247 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 31 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu3g00247 152 SUPERFAMILY Histone-fold 41 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00247 Lapu-Chr3 2607635 2608093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00247 38 149 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.643 9.13e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu3g00247 CBFD_NFYB_HMF 5.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00247 K08065 - gmx:100786046 210.69