Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00243 ATGTTCAGTCCAAGCGTGGATTCTGCGAGGGATGCTGGTGGTGTGGCAGGGACTGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGGGGAAGAAGTGTGTATCTAAGTGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAAGGCTGCCCTACTGTGTTTCAAGTTATTCACAGCTTGGCCCCTGGTTATCATCAGTACAAGTTTTATGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTGTTTATCTGGAGAATATGGGTTAGTTAATACCGTTTTATTGGCCACTGATCCTAATTTTGTACCTGTTTTAACTCCAGACATAGTTTCTGGATCTAACATGGATGTGGATAACGAGGCTTTTCGACGCATGGTCCGATTGACAGATGGTACATTAAGTAATGTGTTGTTGCCAAGAATATCAGATGTTGATGTACAGACCTCTCGTCAGCGCATTTCTTCGTTCCTATCTACGTGCACAGCATATGAATTACTTCCCGAGTCAGGCAAGGTTGTTACCTTGGATCTGGATCTGCCTGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACATCTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCCTTGGATTTTATTTTAATTTTAAGAGAGCTTGGAAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAATGGACAGCATTTACGCAATGTTTTATCCGTGCAGGGCCATATGATAATTTGAAAGAGATTGCTGTGAAGATCCTGCAAAATGGAATTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGCTCATTTCCCCAGCTACTACACCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTGCCAATACTTCAACTTCCAATCTGTGCAATCCCTGTGGGCACGTGGGTGCCCAAAATTGGGGAGTCAAATAGCCAGCCTCTAGCAATGTTGAGACCAAACGCTTCACTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAATGACTCGTTACTGGATATATATTGTCGAAGTGATATAACAGCTTTGGCGAAGGACAGAACTTATACCCATATCAATCTGGATGAAATGACTGTTCATCAGGCATTGCAATTGGGGCAGGATTTATACAGTCCTTACGAACCGAGAAGTCAAAGGTGTCAGATGTGTTTGCGAACTGATTCTCTGCATGAAGTGATGGAACGTTTGTCTCATCCAGGAGTGAGGCGGCTTGTCATTGTGGAAGCTGGGAGCAAGCGGGTAGAAGGCATCATATCACTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1446 0.4329 MFSPSVDSARDAGGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFYVDGEWRHDEHQPCLSGEYGLVNTVLLATDPNFVPVLTPDIVSGSNMDVDNEAFRRMVRLTDGTLSNVLLPRISDVDVQTSRQRISSFLSTCTAYELLPESGKVVTLDLDLPVKQAFHILHEQGIPMAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFTQCFIRAGPYDNLKEIAVKILQNGISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNSQPLAMLRPNASLTSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRTYTHINLDEMTVHQALQLGQDLYSPYEPRSQRCQMCLRTDSLHEVMERLSHPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00243 481 SUPERFAMILY CBS-domain pair 345 480 IPR046342 -
Lapu3g00243 481 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Lapu3g00243 481 Pfam CBS domain 347 393 IPR000644 -
Lapu3g00243 481 Pfam CBS domain 434 480 IPR000644 -
Lapu3g00243 481 SUPERFAMILY CBS-domain pair 157 318 IPR046342 -
Lapu3g00243 481 CDD E_set_AMPKbeta_like_N 22 100 - -
Lapu3g00243 481 Gene3D - 148 321 IPR046342 -
Lapu3g00243 481 ProSiteProfiles CBS domain profile. 428 481 IPR000644 -
Lapu3g00243 481 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 153 479 - -
Lapu3g00243 481 Gene3D Immunoglobulins 18 101 IPR013783 -
Lapu3g00243 481 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Lapu3g00243 481 SMART cbs_1 349 397 IPR000644 -
Lapu3g00243 481 SMART cbs_1 431 480 IPR000644 -
Lapu3g00243 481 SMART cbs_1 177 226 IPR000644 -
Lapu3g00243 481 SUPERFAMILY E set domains 21 102 IPR014756 -
Lapu3g00243 481 ProSiteProfiles CBS domain profile. 346 402 IPR000644 -
Lapu3g00243 481 Gene3D - 329 481 IPR046342 -
Lapu3g00243 481 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00243 Lapu-Chr3 2551237 2560838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00243 11 104 Protein tyrosine phosphatase (PTP) family AT3G01510 31.250 7.99e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00243 - - gmx:100810976 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00243 3 2551237 2560838 Lapu3g00243 3 2551237 2560838 ECH
Lapu3g00243 3 2551237 2560838 Lapu9g00142 9 1282420 1296207 PCT