Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00241 ATGAAGGACACAATTAATTTTTTCCGTTGGTCTGGGCCATCGAGTGCTTCTCCCTCCGCCGCAGTAGACACCGCCGCAGTAGACACCCTCGTCATGGTGAATCTCCACACTGACAGAGCACTTCTCTTTCTCCGACTGACGAAGTTGTCAACCCTAAGAACCCTTCACCATCGTCATCATCATTCTCTTCTCAATCTGAATCTCAATCTCAACCCGCCCTTCTCCATCTGCTTCAATTATTTCAAATTCTCCACGCTCCCCAACGGCCACTCCTCATTCGTTGTCTCCTACCTCATCTCCACCTACGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCCCGCTACCTCCGCTTCCACAGCCCCCAGAAGCCCGACTCTGTCCTTGCCTTATTCTCCGAGAACGGCTTCTCCTTGTCCCAAATCCGCTCCATCGTCAAACGCGAAAGCCGCATCCTCGTCAGCGACCCCGACAAGGTCCTCCTCCCCAAGCTCCTATTCCTCCGCTCCAAAGGCGCCTCCCCGGCCGACATAGTCCACATGGTCACCAACTTCCCCCGCTTCCTCTTCCGCAGCCTCCACAACCACATTGTCCCCACCTACCTCTTCGTCAAACGCTTCATGGACTCCGATAAGGAAATCATCGCCTGTCTCAAGCGCGGCCCCTACCTCATTTACGACAGTCGCGTATCTCTCAACATCCAAATTCTCCTCGATAACGGCGTCAAACGCTCCAACATCGCCAGGATGTTAAACACGAGGCCCTCTGCCTTCTGCTCCTGTAACTTGTCGGACACGGTTCGTGAATTGAAGGAAATGGGGTTTGACACTTCCACCTCCATTTTCGCCGTGGCCATGCTCGCCAAAAGGACTGTGAGTAAAGCCAAGTGGGGCAACAAGGTTGAGGCTTTTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGAGGCATTTAGGAAGCAACCTTATTGCATGTTGACATCCCGTGAGAAGATTGATGCTTTGTTCAGATTTTGGGTTGAGGTGTTAGGGTATAGCTCTTTGGAGCTTTTCAAGTATCCCGTTGTTTTTCAGATGAGTCTCCAGAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGGTTTCTTGCCGAGGAAGGTTTGAGGAAAAAGGGTGCCAGCTATGTCTCGCCTTTTCTCTTGACGGAGAATGTGTTTCGGGAGAAGTTTGTCAATCGTTTTGAGAAGCATTCTTCTCAGTTGTTGAAGATGTATGAGAAAAACGGAGCGAATATCGGGGAGGAGAAGGAGATGAAGAAGAATGCTTGCTTGTAG 1308 0.5153 MKDTINFFRWSGPSSASPSAAVDTAAVDTLVMVNLHTDRALLFLRLTKLSTLRTLHHRHHHSLLNLNLNLNPPFSICFNYFKFSTLPNGHSSFVVSYLISTYGFSPESALSASRYLRFHSPQKPDSVLALFSENGFSLSQIRSIVKRESRILVSDPDKVLLPKLLFLRSKGASPADIVHMVTNFPRFLFRSLHNHIVPTYLFVKRFMDSDKEIIACLKRGPYLIYDSRVSLNIQILLDNGVKRSNIARMLNTRPSAFCSCNLSDTVRELKEMGFDTSTSIFAVAMLAKRTVSKAKWGNKVEAFKKWGWSEEHVLEAFRKQPYCMLTSREKIDALFRFWVEVLGYSSLELFKYPVVFQMSLQKRIVPRSLVLRFLAEEGLRKKGASYVSPFLLTENVFREKFVNRFEKHSSQLLKMYEKNGANIGEEKEMKKNACL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00241 435 Gene3D Transcription termination factor 3, mitochondrial 191 414 IPR038538 -
Lapu3g00241 435 Pfam mTERF 291 380 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 Pfam mTERF 128 276 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 FunFam Mitochondrial transcription termination factor-like 192 409 - -
Lapu3g00241 435 SMART mt_12 142 173 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 SMART mt_12 247 275 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 SMART mt_12 346 380 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Lapu3g00241 435 PANTHER CGI-12 PROTEIN-RELATED 88 404 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00241 Lapu-Chr3 2518226 2523236 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu3g00241 mTERF 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00241 K15032 - gmx:100788877 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00241 3 2518226 2523236 Lapu3g00241 3 2518226 2523236 ECH