Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00240 ATGGAGCGGTACGGCCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGGCGCCGACGTGGGCGTAGAAGAGTCATCGTGGCAAGCAGCTGCCGAATCCTATCCTCTGCGTCCCGATGAGGCTGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGTGACCGTGCCGCGGTCATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCCTGCAAGTACCACCATCCTAGACAGGCAGCAGGCACTCCTACCCCTGTGCCACTAAATTATTATGGATATCCATTGCGAGTGGGGGAGAAAGATTGTTCCTATTATGTGAAGACTGGACAGTGCAAATTTGGTGCAACTTGTAAATTCCATCATCCCCAACCTGCAGGTGTCCAAGTAATTGCACCATCACCGGTTCCCTCTGTTTCACATCTGCCTGTACCTGTACCTTCACCAGTATATCCAACTGTACAGCCCCAATCTGGTCCTTCGCAACAACAATATGGTGTACTTGTTGCAAGACCACCTATGCTACCTGGCTCAGTAGTTCAGGGTCCATATGGGCCTATGGTAGTGTCACCTGCCATGGTCCCTTTTTCGGGTTGGGGTCCTTATCAGGCTCCTGCAACAAACCCTGTAATTCCATCTAGCACTACGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCGCTACCTTCATCGGCAGCTACTTATACTGGACCTTTTCACCCTTCTGGTTCCTCAATTGGTCCTTCAGGGACTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGCAAGTTTGGTCCATCTTGCCGATATCATCATCCACCAGACAAGGGTGCGCCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAGTTTGCAAATTTGGTTCTGCTTGCAAATTTGATCATCCTATGGGATCACTTAGTTATAGTCCATCTGCCTCATCCCTGGCCGACATGCCAGTTGCACCTTATCCTGTGGGTTCCTCAATTGGTACCCTTGCTCCGTCATCTTCATCGTCAGAGTTCCGGCCTGAACTTGGTGCAGGAGTCAGTAAGGAGGTGGTTTCATCCAGAATGTCTTCAATGAGCACATCAACCGGAGCAGCTGGTTTGACCTTGTCAAGTGTTGGACCCATTTCTCATTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1443 0.508 MERYGRASEGSQSDPSPEWTVAGADVGVEESSWQAAAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTPTPVPLNYYGYPLRVGEKDCSYYVKTGQCKFGATCKFHHPQPAGVQVIAPSPVPSVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATNPVIPSSTTSNVGSTQLYGITPLPSSAATYTGPFHPSGSSIGPSGTIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSEFRPELGAGVSKEVVSSRMSSMSTSTGAAGLTLSSVGPISHSSTQPSAQSSSSSATTSATTSSTVSHTSS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00240 480 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Lapu3g00240 480 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Lapu3g00240 480 SMART c3hfinal6 43 70 IPR000571 GO:0046872
Lapu3g00240 480 SMART c3hfinal6 137 162 IPR000571 GO:0046872
Lapu3g00240 480 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Lapu3g00240 480 SUPERFAMILY CCCH zinc finger 351 377 IPR036855 GO:0046872
Lapu3g00240 480 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Lapu3g00240 480 Gene3D - 123 172 - -
Lapu3g00240 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872
Lapu3g00240 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 162 IPR000571 GO:0046872
Lapu3g00240 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872
Lapu3g00240 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 374 IPR000571 GO:0046872
Lapu3g00240 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Lapu3g00240 480 SUPERFAMILY CCCH zinc finger 136 163 IPR036855 GO:0046872
Lapu3g00240 480 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872
Lapu3g00240 480 PANTHER PROTEIN PHOSPHATASE RELATED 30 409 - -
Lapu3g00240 480 Gene3D - 43 119 - -
Lapu3g00240 480 SUPERFAMILY CCCH zinc finger 92 117 IPR036855 GO:0046872
Lapu3g00240 480 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Lapu3g00240 480 FunFam CCCH type zinc finger protein 299 384 - -
Lapu3g00240 480 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g00240 480 SUPERFAMILY CCCH zinc finger 304 329 IPR036855 GO:0046872
Lapu3g00240 480 SUPERFAMILY CCCH zinc finger 46 72 IPR036855 GO:0046872
Lapu3g00240 480 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Lapu3g00240 480 MobiDBLite consensus disorder prediction 426 480 - -
Lapu3g00240 480 Gene3D - 301 378 - -
Lapu3g00240 480 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00240 Lapu-Chr3 2504687 2509578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00240 1 456 C2H2 Transcription Factor Family AT5G18550 54.025 8.35e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g00240 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00240 - - gmx:100789405 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00240 3 2504687 2509578 Lapu6g01477 6 14591298 14602376 PCT