Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00239 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGATCCCAACCAAACTCAAATGTGTCTCTCTCTTCTCCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCAGAACCAGGGAGGTTCCTCGGGGTAAGGAGGCGACCTTGGGGTCGATATGCTGCTGAAATCAGAGACCCCACAACCAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGTCAGGCAAGAACAAACTTTGTTTACTCTGACAACATCAACTTCCACACTATCCTTTCTCCTGTGGATGTTCAAGTTCAAGTTCAACCTCTTCTGCCAGCTTCACAGTTCCTCACTAGCACCACTCACTCAAAACAACAAAACAACCAAAGTAGCCTCCCTCAGGTTATTCACACTTCAAACCGTGGAAACCCCTCCCCATTGAACAATGATGTGTGTGTTGAAACCACATATGGGTCAGCTAAGGATGATAGTTTCTTCTTTTCCAGTGATTCTAACTCAGGCTATCTGGAATGCATAGTTCCTGATAACTGTTTCAGACCTGCTTCCTCCAGCACCAACAGTTCAAACTCCAGAAAGAGCAATGTGAGCGATCATAAGGCTAACATAAACTCCATAGAGAGTACTAACCATCACCAGTACTCACATGTTGACATCACTTCATTCTCTCAGGAAGGCATGGAAATGGCACCAAGGGCCTCTAACTTTTCAGATTTTTGTTATCCAAGTGAACTGAGTCAAGGATCATGGGATGATCAGCAGTCGTGGGATTGGAACTGCAGTGAACTTTCAGCTATATTTAAGAATCCATTAAGGGTGGAAAATGGGTGCATGGATCCATTGTACCCCATGACTGATCACAGTCCTAGTCCAAGCCCAGGCTATGGGCTAATGAATGAGGCTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1044 0.4569 MSTSRTSDTPFKGYDPNQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTILSPVDVQVQVQPLLPASQFLTSTTHSKQQNNQSSLPQVIHTSNRGNPSPLNNDVCVETTYGSAKDDSFFFSSDSNSGYLECIVPDNCFRPASSSTNSSNSRKSNVSDHKANINSIESTNHHQYSHVDITSFSQEGMEMAPRASNFSDFCYPSELSQGSWDDQQSWDWNCSELSAIFKNPLRVENGCMDPLYPMTDHSPSPSPGYGLMNEAASSTTCSPSLPPFGDVDLGYPLF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00239 347 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Lapu3g00239 347 MobiDBLite consensus disorder prediction 137 165 - -
Lapu3g00239 347 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 225 - -
Lapu3g00239 347 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Lapu3g00239 347 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Lapu3g00239 347 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lapu3g00239 347 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Lapu3g00239 347 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Lapu3g00239 347 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Lapu3g00239 347 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Lapu3g00239 347 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00239 Lapu-Chr3 2499604 2500647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00239 1 213 AP2-EREBP Transcription Factor Family AT5G18560 47.674 3.22e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g00239 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00239 - - gmx:100812047 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00239 3 2499604 2500647 Lapu6g01478 6 14607090 14608055 PCT