Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00232 ATGGGTTGTTGTCTCTCTTGTGCTACCGAAATACTCAACATTTGGCAATCTGGGAACACGCCAGATAGAAGAACAAGATCAGGGAGTGGGAGTCGTCCGTCGGATGCGTCAACTGGTATTAAACCTGCAAAAGTTTTTACATTCAGAGAGCTTGCATCTGCTACAGAGAACTTTAGGTCACAATTTTTTTTAGGTCGAGGGAGCCTTGGGTGTGTGTACAAAGGTCAACTTAGGAACGGCCAACATGTTGCTGTGAAACTGCTTGACAAAAATAGGCAACAAGGAGACAAAGAATTTTCTGCGGAGGTTCAGATGCTGTCTCTCATGCATCACCCAAATCTTGTGAAATTGATTGGTTACTGTTTTGAACGTGATGAGAGGCTACTTGTTTACGAGTATATGCCATTGGGGTCTTTGCAGCATCATTTATACGATCTTCCTATTGACAGGAAACCCCTTGAATGGAAGAAAAGGATGAGGATAGCATGTGGTGTGGCAAAGGGATTGGAGTATTTGCATGATTGGGGAGAGCAACCTGTGATATTTAGAGACTTGAAGTCATCGAACATCCTTCTGGACGAGGATTATCATCCCAAGTTGTCTGATTTGGGGATGGCAAAATTTTGTCCCCTTGGTGACAGCAGTCATGTGTCAACGCGAGTGGCGGAAACAGATGGTTACTGTGCCCCAGAATACGAGGCCACTGGCCACCTAACTCCTAAATGTGATATCTACAGTCTTGGAGTGGTCCTCCTCGAACTCATTTCGGGGCGCAAGGTCATTGATAAGACTCGTGCACCTTATATGCGTCATCTCGTTATGTGGGCGCGACCTCTTTTCGGGGACCATAATCAGTTCGATAAATTGGTCGACCCTCTACTTCAGGGGCTTTTTCCATTGGCAGGGCTTTATCAGGCAATTGCTGTTGCGGCAATGTGTTTGAATGAAGATGCCGATAGAAGGCCTGAGATACGGGAAGTGGTTGCTATTCTCACGTACCTGGAATCACAGCCCTATGACCCAAATGGTCCATTCCCAGAGTTTTGCAGAAAAGAGACTGAAAGGAAACTACGAAAGAAACGACAAAAGAAACAGGTATCTCAGAGAGGCAGTAAGAGGTTCGCTGCAGAAACTGGAACAGCTAGAGAAACTCCAGGCAACCCAGACGTGGACACACGAACTGCAGTTGAAGAAACGGAGTAG 1203 0.4605 MGCCLSCATEILNIWQSGNTPDRRTRSGSGSRPSDASTGIKPAKVFTFRELASATENFRSQFFLGRGSLGCVYKGQLRNGQHVAVKLLDKNRQQGDKEFSAEVQMLSLMHHPNLVKLIGYCFERDERLLVYEYMPLGSLQHHLYDLPIDRKPLEWKKRMRIACGVAKGLEYLHDWGEQPVIFRDLKSSNILLDEDYHPKLSDLGMAKFCPLGDSSHVSTRVAETDGYCAPEYEATGHLTPKCDIYSLGVVLLELISGRKVIDKTRAPYMRHLVMWARPLFGDHNQFDKLVDPLLQGLFPLAGLYQAIAVAAMCLNEDADRRPEIREVVAILTYLESQPYDPNGPFPEFCRKETERKLRKKRQKKQVSQRGSKRFAAETGTARETPGNPDVDTRTAVEETE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00232 400 MobiDBLite consensus disorder prediction 353 400 - -
Lapu3g00232 400 Gene3D Transferase(Phosphotransferase) domain 1 134 341 - -
Lapu3g00232 400 ProSiteProfiles Protein kinase domain profile. 58 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00232 400 PANTHER OS07G0668900 PROTEIN 37 342 - -
Lapu3g00232 400 FunFam Somatic embryogenesis receptor kinase 1 30 133 - -
Lapu3g00232 400 FunFam Serine/threonine-protein kinase PBS1 134 347 - -
Lapu3g00232 400 Gene3D Phosphorylase Kinase; domain 1 22 133 - -
Lapu3g00232 400 SUPERFAMILY Protein kinase-like (PK-like) 44 348 IPR011009 -
Lapu3g00232 400 MobiDBLite consensus disorder prediction 18 38 - -
Lapu3g00232 400 CDD STKc_IRAK 64 332 - -
Lapu3g00232 400 SMART serkin_6 58 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00232 400 MobiDBLite consensus disorder prediction 18 36 - -
Lapu3g00232 400 Pfam Protein kinase domain 63 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00232 Lapu-Chr3 2432428 2434512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00232 43 338 Glycoside Hydrolase AT3G07070 57.912 4.44e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lapu3g00232 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00232 - - pvu:PHAVU_003G101800g 457.988